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RAG1 (recombination activating gene 1)

Identity

Other namesRAG-1
RNF74
HGNC (Hugo) RAG1
LocusID (NCBI) 5896
Atlas_Id 350
Location 11p12
Location_base_pair Starts at 36589563 and ends at 36601310 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 17 ]
  dic(3;9)(p14;p13) PAX5/FOXP1
dic(7;9)(p11-12;p12-13) PAX5/LOC392027
dic(9;12)(p13;p12) PAX5/SLCO1B3
dic(9;16)(p13;q11) PAX5/?
dic(9;17)(p13;q11) PAX5/TAOK1
dic(9;18)(p13;q11) PAX5/ZNF521
t(1;9)(p13;p12) PAX5/HIPK1
inv(7)(p15q34) TRB/HOXA10;t(7;7)(p15;q34) TRB/HOXA10
t(7;9)(q11;p12) PAX5/POM121
t(8;9)(q24;p13) ?/MYC
t(9;9)(p13;p24) PAX5/JAK2;del(9)(p13p24) PAX5/JAK2;inv(9)(p13p24) PAX5/JAK2
t(9;13)(p12;q21) PAX5/DACH1
t(9;15)(p13;q24) PAX5/PML
t(9;15)(p13;q24) PAX5/GOLGA6A
t(9;17)(p13;p12) PAX5/NCOR1
t(9;22)(p13;q13) PAX5/BRD1
t(X;9)(q21;p13) PAX5/DACH2

External links

Nomenclature
HGNC (Hugo)RAG1   9831
Cards
Entrez_Gene (NCBI)RAG1  5896  recombination activating gene 1
AliasesRAG-1; RNF74
GeneCards (Weizmann)RAG1
Ensembl hg19 (Hinxton)ENSG00000166349 [Gene_View]  chr11:36589563-36601310 [Contig_View]  RAG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166349 [Gene_View]  chr11:36589563-36601310 [Contig_View]  RAG1 [Vega]
ICGC DataPortalENSG00000166349
TCGA cBioPortalRAG1
AceView (NCBI)RAG1
Genatlas (Paris)RAG1
WikiGenes5896
SOURCE (Princeton)RAG1
Genomic and cartography
GoldenPath hg19 (UCSC)RAG1  -     chr11:36589563-36601310 +  11p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAG1  -     11p12   [Description]    (hg38-Dec_2013)
EnsemblRAG1 - 11p12 [CytoView hg19]  RAG1 - 11p12 [CytoView hg38]
Mapping of homologs : NCBIRAG1 [Mapview hg19]  RAG1 [Mapview hg38]
OMIM179615   233650   601457   603554   609889   
Gene and transcription
Genbank (Entrez)AY235716 BC037344 M29474
RefSeq transcript (Entrez)NM_000448
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_007528 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)RAG1
Cluster EST : UnigeneHs.677010 [ NCBI ]
CGAP (NCI)Hs.677010
Alternative Splicing GalleryENSG00000166349
Gene ExpressionRAG1 [ NCBI-GEO ]   RAG1 [ EBI - ARRAY_EXPRESS ]   RAG1 [ SEEK ]   RAG1 [ MEM ]
Gene Expression Viewer (FireBrowse)RAG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5896
GTEX Portal (Tissue expression)RAG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15918 (Uniprot)
NextProtP15918  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15918
Splice isoforms : SwissVarP15918 (Swissvar)
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusP15918
Domaine pattern : Prosite (Expaxy)NBD (PS51487)    ZF_RAG1 (PS51765)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RAG1    RAG1_Znf    RAG_nonamer-bd_dom    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)RAG1 (PF12940)    zf-C3HC4 (PF00097)    zf-RAG1 (PF10426)   
Domain families : Pfam (NCBI)pfam12940    pfam00097    pfam10426   
Domain families : Smart (EMBL)RING (SM00184)  ZnF_C2H2 (SM00355)  
DMDM Disease mutations5896
Blocks (Seattle)RAG1
SuperfamilyP15918
Human Protein AtlasENSG00000166349
Peptide AtlasP15918
HPRD01556
IPIIPI00013914   IPI00975927   
Protein Interaction databases
DIP (DOE-UCLA)P15918
IntAct (EBI)P15918
FunCoupENSG00000166349
BioGRIDRAG1
STRING (EMBL)RAG1
ZODIACRAG1
Ontologies - Pathways
QuickGOP15918
Ontology : AmiGOadaptive immune response  pre-B cell allelic exclusion  DNA binding  endonuclease activity  ubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  DNA recombination  immune response  zinc ion binding  histone monoubiquitination  ligase activity  B cell differentiation  T cell differentiation in thymus  V(D)J recombination  V(D)J recombination  histone binding  protein homodimerization activity  T cell homeostasis  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  sequence-specific DNA binding  positive regulation of T cell differentiation  metal ion binding  thymus development  protein autoubiquitination  ubiquitin protein ligase activity  negative regulation of thymocyte apoptotic process  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIadaptive immune response  pre-B cell allelic exclusion  DNA binding  endonuclease activity  ubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  DNA recombination  immune response  zinc ion binding  histone monoubiquitination  ligase activity  B cell differentiation  T cell differentiation in thymus  V(D)J recombination  V(D)J recombination  histone binding  protein homodimerization activity  T cell homeostasis  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  sequence-specific DNA binding  positive regulation of T cell differentiation  metal ion binding  thymus development  protein autoubiquitination  ubiquitin protein ligase activity  negative regulation of thymocyte apoptotic process  nucleic acid phosphodiester bond hydrolysis  
Pathways : KEGGFoxO signaling pathway    Primary immunodeficiency   
NDEx Network
Atlas of Cancer Signalling NetworkRAG1
Wikipedia pathwaysRAG1
Orthology - Evolution
OrthoDB5896
GeneTree (enSembl)ENSG00000166349
Phylogenetic Trees/Animal Genes : TreeFamRAG1
Homologs : HomoloGeneRAG1
Homology/Alignments : Family Browser (UCSC)RAG1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRAG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAG1
dbVarRAG1
ClinVarRAG1
1000_GenomesRAG1 
Exome Variant ServerRAG1
ExAC (Exome Aggregation Consortium)RAG1 (select the gene name)
Genetic variants : HAPMAP5896
Genomic Variants (DGV)RAG1 [DGVbeta]
Mutations
ICGC Data PortalRAG1 
TCGA Data PortalRAG1 
Broad Tumor PortalRAG1
OASIS PortalRAG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAG1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch RAG1
DgiDB (Drug Gene Interaction Database)RAG1
DoCM (Curated mutations)RAG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAG1 (select a term)
intoGenRAG1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:36589563-36601310  ENSG00000166349
CONAN: Copy Number AnalysisRAG1 
Mutations and Diseases : HGMDRAG1
OMIM179615    233650    601457    603554    609889   
MedgenRAG1
Genetic Testing Registry RAG1
NextProtP15918 [Medical]
TSGene5896
GENETestsRAG1
Huge Navigator RAG1 [HugePedia]
snp3D : Map Gene to Disease5896
BioCentury BCIQRAG1
ClinGenRAG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5896
Chemical/Pharm GKB GenePA34185
Clinical trialRAG1
Miscellaneous
canSAR (ICR)RAG1 (select the gene name)
Probes
Litterature
PubMed115 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAG1
EVEXRAG1
GoPubMedRAG1
iHOPRAG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat May 28 11:18:16 CEST 2016

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