Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RAI14 (retinoic acid induced 14)

Identity

Alias_symbol (synonym)NORPEG
KIAA1334
RAI13
DKFZp564G013
Other alias
HGNC (Hugo) RAI14
LocusID (NCBI) 26064
Atlas_Id 72474
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 34656491 and ends at 34832612 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJC21 (5p13.2) / RAI14 (5p13.2)RAI14 (5p13.2) / ASB4 (7q21.3)RAI14 (5p13.2) / LAPTM4A (2p24.1)
RAI14 (5p13.2) / RAI14 (5p13.2)RAI14 (5p13.2) / SLC26A7 (8q21.3)RAI14 (5p13.2) / SORBS2 (4q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(5;7)(p13;q21) RAI14/ASB4

External links

Nomenclature
HGNC (Hugo)RAI14   14873
Cards
Entrez_Gene (NCBI)RAI14  26064  retinoic acid induced 14
AliasesNORPEG; RAI13
GeneCards (Weizmann)RAI14
Ensembl hg19 (Hinxton)ENSG00000039560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000039560 [Gene_View]  chr5:34656491-34832612 [Contig_View]  RAI14 [Vega]
ICGC DataPortalENSG00000039560
TCGA cBioPortalRAI14
AceView (NCBI)RAI14
Genatlas (Paris)RAI14
WikiGenes26064
SOURCE (Princeton)RAI14
Genetics Home Reference (NIH)RAI14
Genomic and cartography
GoldenPath hg38 (UCSC)RAI14  -     chr5:34656491-34832612 +  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAI14  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblRAI14 - 5p13.2 [CytoView hg19]  RAI14 - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBIRAI14 [Mapview hg19]  RAI14 [Mapview hg38]
OMIM606586   
Gene and transcription
Genbank (Entrez)AB037755 AF155135 AK023135 AK297964 AK308306
RefSeq transcript (Entrez)NM_001145520 NM_001145521 NM_001145522 NM_001145523 NM_001145525 NM_015577
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAI14
Cluster EST : UnigeneHs.431400 [ NCBI ]
CGAP (NCI)Hs.431400
Alternative Splicing GalleryENSG00000039560
Gene ExpressionRAI14 [ NCBI-GEO ]   RAI14 [ EBI - ARRAY_EXPRESS ]   RAI14 [ SEEK ]   RAI14 [ MEM ]
Gene Expression Viewer (FireBrowse)RAI14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26064
GTEX Portal (Tissue expression)RAI14
Human Protein AtlasENSG00000039560-RAI14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0K7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0K7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0K7
Splice isoforms : SwissVarQ9P0K7
PhosPhoSitePlusQ9P0K7
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam00023    pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)RAI14
DMDM Disease mutations26064
Blocks (Seattle)RAI14
SuperfamilyQ9P0K7
Human Protein Atlas [tissue]ENSG00000039560-RAI14 [tissue]
Peptide AtlasQ9P0K7
HPRD09416
IPIIPI00759532   IPI00292953   IPI00965169   IPI00759780   IPI00964560   IPI00966713   IPI00967485   IPI00964019   IPI00968040   IPI00967756   IPI00965295   IPI00965591   IPI00965651   IPI00964284   IPI00965859   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0K7
IntAct (EBI)Q9P0K7
FunCoupENSG00000039560
BioGRIDRAI14
STRING (EMBL)RAI14
ZODIACRAI14
Ontologies - Pathways
QuickGOQ9P0K7
Ontology : AmiGOfibrillar center  nucleus  mitochondrion  cytosol  cytoskeleton  cell cortex  
Ontology : EGO-EBIfibrillar center  nucleus  mitochondrion  cytosol  cytoskeleton  cell cortex  
NDEx NetworkRAI14
Atlas of Cancer Signalling NetworkRAI14
Wikipedia pathwaysRAI14
Orthology - Evolution
OrthoDB26064
GeneTree (enSembl)ENSG00000039560
Phylogenetic Trees/Animal Genes : TreeFamRAI14
HOVERGENQ9P0K7
HOGENOMQ9P0K7
Homologs : HomoloGeneRAI14
Homology/Alignments : Family Browser (UCSC)RAI14
Gene fusions - Rearrangements
Fusion : QuiverRAI14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAI14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAI14
dbVarRAI14
ClinVarRAI14
1000_GenomesRAI14 
Exome Variant ServerRAI14
ExAC (Exome Aggregation Consortium)ENSG00000039560
GNOMAD BrowserENSG00000039560
Genetic variants : HAPMAP26064
Genomic Variants (DGV)RAI14 [DGVbeta]
DECIPHERRAI14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAI14 
Mutations
ICGC Data PortalRAI14 
TCGA Data PortalRAI14 
Broad Tumor PortalRAI14
OASIS PortalRAI14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAI14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAI14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAI14
DgiDB (Drug Gene Interaction Database)RAI14
DoCM (Curated mutations)RAI14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAI14 (select a term)
intoGenRAI14
Cancer3DRAI14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606586   
Orphanet
DisGeNETRAI14
MedgenRAI14
Genetic Testing Registry RAI14
NextProtQ9P0K7 [Medical]
TSGene26064
GENETestsRAI14
Target ValidationRAI14
Huge Navigator RAI14 [HugePedia]
snp3D : Map Gene to Disease26064
BioCentury BCIQRAI14
ClinGenRAI14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26064
Chemical/Pharm GKB GenePA34189
Clinical trialRAI14
Miscellaneous
canSAR (ICR)RAI14 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAI14
EVEXRAI14
GoPubMedRAI14
iHOPRAI14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:49:00 CET 2018
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