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RAI2 (retinoic acid induced 2)

Identity

Other alias-
HGNC (Hugo) RAI2
LocusID (NCBI) 10742
Atlas_Id 55820
Location Xp22.13  [Link to chromosome band Xp22]
Location_base_pair Starts at 17800049 and ends at 17861337 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAI2   9835
Cards
Entrez_Gene (NCBI)RAI2  10742  retinoic acid induced 2
Aliases
GeneCards (Weizmann)RAI2
Ensembl hg19 (Hinxton)ENSG00000131831 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131831 [Gene_View]  ENSG00000131831 [Sequence]  chrX:17800049-17861337 [Contig_View]  RAI2 [Vega]
ICGC DataPortalENSG00000131831
TCGA cBioPortalRAI2
AceView (NCBI)RAI2
Genatlas (Paris)RAI2
WikiGenes10742
SOURCE (Princeton)RAI2
Genetics Home Reference (NIH)RAI2
Genomic and cartography
GoldenPath hg38 (UCSC)RAI2  -     chrX:17800049-17861337 -  Xp22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAI2  -     Xp22.13   [Description]    (hg19-Feb_2009)
EnsemblRAI2 - Xp22.13 [CytoView hg19]  RAI2 - Xp22.13 [CytoView hg38]
Mapping of homologs : NCBIRAI2 [Mapview hg19]  RAI2 [Mapview hg38]
OMIM300217   
Gene and transcription
Genbank (Entrez)AI291859 AK056214 AK298873 AK314631 BC027937
RefSeq transcript (Entrez)NM_001172732 NM_001172739 NM_001172743 NM_021785
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAI2
Cluster EST : UnigeneHs.446680 [ NCBI ]
CGAP (NCI)Hs.446680
Alternative Splicing GalleryENSG00000131831
Gene ExpressionRAI2 [ NCBI-GEO ]   RAI2 [ EBI - ARRAY_EXPRESS ]   RAI2 [ SEEK ]   RAI2 [ MEM ]
Gene Expression Viewer (FireBrowse)RAI2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10742
GTEX Portal (Tissue expression)RAI2
Human Protein AtlasENSG00000131831-RAI2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5P3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5P3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5P3
Splice isoforms : SwissVarQ9Y5P3
PhosPhoSitePlusQ9Y5P3
Domains : Interpro (EBI)RAI2/SOBP   
Domain families : Pfam (Sanger)SOBP (PF15279)   
Domain families : Pfam (NCBI)pfam15279   
Conserved Domain (NCBI)RAI2
DMDM Disease mutations10742
Blocks (Seattle)RAI2
SuperfamilyQ9Y5P3
Human Protein Atlas [tissue]ENSG00000131831-RAI2 [tissue]
Peptide AtlasQ9Y5P3
HPRD02199
IPIIPI00001685   IPI00910334   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5P3
IntAct (EBI)Q9Y5P3
FunCoupENSG00000131831
BioGRIDRAI2
STRING (EMBL)RAI2
ZODIACRAI2
Ontologies - Pathways
QuickGOQ9Y5P3
Ontology : AmiGOmolecular_function  protein binding  cellular_component  embryo development ending in birth or egg hatching  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  embryo development ending in birth or egg hatching  
NDEx NetworkRAI2
Atlas of Cancer Signalling NetworkRAI2
Wikipedia pathwaysRAI2
Orthology - Evolution
OrthoDB10742
GeneTree (enSembl)ENSG00000131831
Phylogenetic Trees/Animal Genes : TreeFamRAI2
HOVERGENQ9Y5P3
HOGENOMQ9Y5P3
Homologs : HomoloGeneRAI2
Homology/Alignments : Family Browser (UCSC)RAI2
Gene fusions - Rearrangements
Fusion : QuiverRAI2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAI2
dbVarRAI2
ClinVarRAI2
1000_GenomesRAI2 
Exome Variant ServerRAI2
ExAC (Exome Aggregation Consortium)ENSG00000131831
GNOMAD BrowserENSG00000131831
Varsome BrowserRAI2
Genetic variants : HAPMAP10742
Genomic Variants (DGV)RAI2 [DGVbeta]
DECIPHERRAI2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAI2 
Mutations
ICGC Data PortalRAI2 
TCGA Data PortalRAI2 
Broad Tumor PortalRAI2
OASIS PortalRAI2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAI2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAI2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RAI2
DgiDB (Drug Gene Interaction Database)RAI2
DoCM (Curated mutations)RAI2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAI2 (select a term)
intoGenRAI2
Cancer3DRAI2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300217   
Orphanet
DisGeNETRAI2
MedgenRAI2
Genetic Testing Registry RAI2
NextProtQ9Y5P3 [Medical]
TSGene10742
GENETestsRAI2
Target ValidationRAI2
Huge Navigator RAI2 [HugePedia]
snp3D : Map Gene to Disease10742
BioCentury BCIQRAI2
ClinGenRAI2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10742
Chemical/Pharm GKB GenePA34193
Clinical trialRAI2
Miscellaneous
canSAR (ICR)RAI2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAI2
EVEXRAI2
GoPubMedRAI2
iHOPRAI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:34:20 CET 2018

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