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RALBP1 (ralA binding protein 1)

Identity

Alias_symbol (synonym)RLIP76
RIP1
RIP
Other aliasRLIP1
HGNC (Hugo) RALBP1
LocusID (NCBI) 10928
Atlas_Id 42037
Location 18p11.22  [Link to chromosome band 18p11]
Location_base_pair Starts at 9475532 and ends at 9538108 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RALBP1 (18p11.22) / MIR100HG (11q24.1)RALBP1 (18p11.22) / RALBP1 (18p11.22)RALBP1 (18p11.22) / TWSG1 (18p11.22)
RP11-159G9.5 () / RALBP1 (18p11.22)WASL (7q31.32) / RALBP1 (18p11.22)RALBP1 18p11.22 / TWSG1 18p11.22
RP11-159G9.5 RALBP1 18p11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RALBP1   9841
Cards
Entrez_Gene (NCBI)RALBP1  10928  ralA binding protein 1
AliasesRIP1; RLIP1; RLIP76
GeneCards (Weizmann)RALBP1
Ensembl hg19 (Hinxton)ENSG00000017797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000017797 [Gene_View]  chr18:9475532-9538108 [Contig_View]  RALBP1 [Vega]
ICGC DataPortalENSG00000017797
TCGA cBioPortalRALBP1
AceView (NCBI)RALBP1
Genatlas (Paris)RALBP1
WikiGenes10928
SOURCE (Princeton)RALBP1
Genetics Home Reference (NIH)RALBP1
Genomic and cartography
GoldenPath hg38 (UCSC)RALBP1  -     chr18:9475532-9538108 +  18p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RALBP1  -     18p11.22   [Description]    (hg19-Feb_2009)
EnsemblRALBP1 - 18p11.22 [CytoView hg19]  RALBP1 - 18p11.22 [CytoView hg38]
Mapping of homologs : NCBIRALBP1 [Mapview hg19]  RALBP1 [Mapview hg38]
OMIM605801   
Gene and transcription
Genbank (Entrez)AB209924 AK300845 AY517554 BC013126 BF794440
RefSeq transcript (Entrez)NM_006788
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RALBP1
Cluster EST : UnigeneHs.528993 [ NCBI ]
CGAP (NCI)Hs.528993
Alternative Splicing GalleryENSG00000017797
Gene ExpressionRALBP1 [ NCBI-GEO ]   RALBP1 [ EBI - ARRAY_EXPRESS ]   RALBP1 [ SEEK ]   RALBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RALBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10928
GTEX Portal (Tissue expression)RALBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15311   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15311  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15311
Splice isoforms : SwissVarQ15311
PhosPhoSitePlusQ15311
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)RALBP1
DMDM Disease mutations10928
Blocks (Seattle)RALBP1
PDB (SRS)2KWH    2KWI    2MBG   
PDB (PDBSum)2KWH    2KWI    2MBG   
PDB (IMB)2KWH    2KWI    2MBG   
PDB (RSDB)2KWH    2KWI    2MBG   
Structural Biology KnowledgeBase2KWH    2KWI    2MBG   
SCOP (Structural Classification of Proteins)2KWH    2KWI    2MBG   
CATH (Classification of proteins structures)2KWH    2KWI    2MBG   
SuperfamilyQ15311
Human Protein AtlasENSG00000017797
Peptide AtlasQ15311
HPRD09013
IPIIPI00009544   IPI00908957   IPI00552562   
Protein Interaction databases
DIP (DOE-UCLA)Q15311
IntAct (EBI)Q15311
FunCoupENSG00000017797
BioGRIDRALBP1
STRING (EMBL)RALBP1
ZODIACRALBP1
Ontologies - Pathways
QuickGOQ15311
Ontology : AmiGOGTPase activator activity  GTPase activator activity  protein binding  cytosol  transport  endocytosis  chemotaxis  signal transduction  small GTPase mediated signal transduction  membrane  ATPase activity  Ral GTPase binding  transmembrane transporter activity  regulation of GTPase activity  ATPase activity, coupled to movement of substances  positive regulation of GTPase activity  Rac GTPase binding  regulation of small GTPase mediated signal transduction  transmembrane transport  
Ontology : EGO-EBIGTPase activator activity  GTPase activator activity  protein binding  cytosol  transport  endocytosis  chemotaxis  signal transduction  small GTPase mediated signal transduction  membrane  ATPase activity  Ral GTPase binding  transmembrane transporter activity  regulation of GTPase activity  ATPase activity, coupled to movement of substances  positive regulation of GTPase activity  Rac GTPase binding  regulation of small GTPase mediated signal transduction  transmembrane transport  
Pathways : BIOCARTARas Signaling Pathway [Genes]    Rac 1 cell motility signaling pathway [Genes]   
Pathways : KEGGRas signaling pathway    Pathways in cancer    Pancreatic cancer   
NDEx NetworkRALBP1
Atlas of Cancer Signalling NetworkRALBP1
Wikipedia pathwaysRALBP1
Orthology - Evolution
OrthoDB10928
GeneTree (enSembl)ENSG00000017797
Phylogenetic Trees/Animal Genes : TreeFamRALBP1
HOVERGENQ15311
HOGENOMQ15311
Homologs : HomoloGeneRALBP1
Homology/Alignments : Family Browser (UCSC)RALBP1
Gene fusions - Rearrangements
Fusion : MitelmanRALBP1/TWSG1 [18p11.22/18p11.22]  
Fusion: TCGARALBP1 18p11.22 TWSG1 18p11.22 BRCA
Fusion: TCGARP11-159G9.5 RALBP1 18p11.22 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRALBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RALBP1
dbVarRALBP1
ClinVarRALBP1
1000_GenomesRALBP1 
Exome Variant ServerRALBP1
ExAC (Exome Aggregation Consortium)RALBP1 (select the gene name)
Genetic variants : HAPMAP10928
Genomic Variants (DGV)RALBP1 [DGVbeta]
DECIPHERRALBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRALBP1 
Mutations
ICGC Data PortalRALBP1 
TCGA Data PortalRALBP1 
Broad Tumor PortalRALBP1
OASIS PortalRALBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRALBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRALBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RALBP1
DgiDB (Drug Gene Interaction Database)RALBP1
DoCM (Curated mutations)RALBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RALBP1 (select a term)
intoGenRALBP1
Cancer3DRALBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605801   
Orphanet
MedgenRALBP1
Genetic Testing Registry RALBP1
NextProtQ15311 [Medical]
TSGene10928
GENETestsRALBP1
Target ValidationRALBP1
Huge Navigator RALBP1 [HugePedia]
snp3D : Map Gene to Disease10928
BioCentury BCIQRALBP1
ClinGenRALBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10928
Chemical/Pharm GKB GenePA34199
Clinical trialRALBP1
Miscellaneous
canSAR (ICR)RALBP1 (select the gene name)
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRALBP1
EVEXRALBP1
GoPubMedRALBP1
iHOPRALBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:17 CEST 2017

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