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RALYL (RALY RNA binding protein-like)

Identity

Alias_symbol (synonym)HNRPCL3
Other alias
HGNC (Hugo) RALYL
LocusID (NCBI) 138046
Atlas_Id 72479
Location 8q21.2  [Link to chromosome band 8q21]
Location_base_pair Starts at 84184865 and ends at 84921843 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FCHSD2 (11q13.4) / RALYL (8q21.2)RALYL (8q21.2) / RALYL (8q21.2)RNF19A (8q22.2) / RALYL (8q21.2)
ZHX1 (8q24.13) / RALYL (8q21.2)FCHSD2 RALYLZHX1 RALYL

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RALYL   27036
Cards
Entrez_Gene (NCBI)RALYL  138046  RALY RNA binding protein-like
AliasesHNRPCL3
GeneCards (Weizmann)RALYL
Ensembl hg19 (Hinxton)ENSG00000184672 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184672 [Gene_View]  chr8:84184865-84921843 [Contig_View]  RALYL [Vega]
ICGC DataPortalENSG00000184672
TCGA cBioPortalRALYL
AceView (NCBI)RALYL
Genatlas (Paris)RALYL
WikiGenes138046
SOURCE (Princeton)RALYL
Genetics Home Reference (NIH)RALYL
Genomic and cartography
GoldenPath hg38 (UCSC)RALYL  -     chr8:84184865-84921843 +  8q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RALYL  -     8q21.2   [Description]    (hg19-Feb_2009)
EnsemblRALYL - 8q21.2 [CytoView hg19]  RALYL - 8q21.2 [CytoView hg38]
Mapping of homologs : NCBIRALYL [Mapview hg19]  RALYL [Mapview hg38]
OMIM614648   
Gene and transcription
Genbank (Entrez)AF070623 AF495529 AF495530 AK094543 AK095026
RefSeq transcript (Entrez)NM_001100391 NM_001100392 NM_001100393 NM_001287243 NM_001287244 NM_173848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RALYL
Cluster EST : UnigeneHs.121663 [ NCBI ]
CGAP (NCI)Hs.121663
Alternative Splicing GalleryENSG00000184672
Gene ExpressionRALYL [ NCBI-GEO ]   RALYL [ EBI - ARRAY_EXPRESS ]   RALYL [ SEEK ]   RALYL [ MEM ]
Gene Expression Viewer (FireBrowse)RALYL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138046
GTEX Portal (Tissue expression)RALYL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SE5
Splice isoforms : SwissVarQ86SE5
PhosPhoSitePlusQ86SE5
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)hnRNP_C    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RALYL
DMDM Disease mutations138046
Blocks (Seattle)RALYL
SuperfamilyQ86SE5
Human Protein AtlasENSG00000184672
Peptide AtlasQ86SE5
HPRD11236
IPIIPI00166137   IPI00980380   IPI00790685   IPI00981789   IPI01013944   IPI00982680   IPI00978453   
Protein Interaction databases
DIP (DOE-UCLA)Q86SE5
IntAct (EBI)Q86SE5
FunCoupENSG00000184672
BioGRIDRALYL
STRING (EMBL)RALYL
ZODIACRALYL
Ontologies - Pathways
QuickGOQ86SE5
Ontology : AmiGORNA binding  protein binding  nucleus  nucleoplasm  identical protein binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleoplasm  identical protein binding  
NDEx NetworkRALYL
Atlas of Cancer Signalling NetworkRALYL
Wikipedia pathwaysRALYL
Orthology - Evolution
OrthoDB138046
GeneTree (enSembl)ENSG00000184672
Phylogenetic Trees/Animal Genes : TreeFamRALYL
HOVERGENQ86SE5
HOGENOMQ86SE5
Homologs : HomoloGeneRALYL
Homology/Alignments : Family Browser (UCSC)RALYL
Gene fusions - Rearrangements
Fusion: TCGAFCHSD2 RALYL
Fusion: TCGAZHX1 RALYL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRALYL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RALYL
dbVarRALYL
ClinVarRALYL
1000_GenomesRALYL 
Exome Variant ServerRALYL
ExAC (Exome Aggregation Consortium)RALYL (select the gene name)
Genetic variants : HAPMAP138046
Genomic Variants (DGV)RALYL [DGVbeta]
DECIPHERRALYL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRALYL 
Mutations
ICGC Data PortalRALYL 
TCGA Data PortalRALYL 
Broad Tumor PortalRALYL
OASIS PortalRALYL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRALYL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRALYL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RALYL
DgiDB (Drug Gene Interaction Database)RALYL
DoCM (Curated mutations)RALYL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RALYL (select a term)
intoGenRALYL
Cancer3DRALYL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614648   
Orphanet
MedgenRALYL
Genetic Testing Registry RALYL
NextProtQ86SE5 [Medical]
TSGene138046
GENETestsRALYL
Target ValidationRALYL
Huge Navigator RALYL [HugePedia]
snp3D : Map Gene to Disease138046
BioCentury BCIQRALYL
ClinGenRALYL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138046
Chemical/Pharm GKB GenePA162400636
Clinical trialRALYL
Miscellaneous
canSAR (ICR)RALYL (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRALYL
EVEXRALYL
GoPubMedRALYL
iHOPRALYL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:10 CEST 2017

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