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RAMP1 (receptor activity modifying protein 1)

Identity

Alias_namesreceptor activity modifying protein 1
receptor (calcitonin) activity modifying protein 1
receptor (G protein-coupled) activity modifying protein 1
Other alias-
HGNC (Hugo) RAMP1
LocusID (NCBI) 10267
Atlas_Id 53840
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 237859544 and ends at 237912117 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAMP1 (2q37.3) / GANAB (11q12.3)RAMP1 (2q37.3) / RBM44 (2q37.3)RAMP1 2q37.3 / RBM44 2q37.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAMP1   9843
Cards
Entrez_Gene (NCBI)RAMP1  10267  receptor activity modifying protein 1
Aliases
GeneCards (Weizmann)RAMP1
Ensembl hg19 (Hinxton)ENSG00000132329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132329 [Gene_View]  chr2:237859544-237912117 [Contig_View]  RAMP1 [Vega]
ICGC DataPortalENSG00000132329
TCGA cBioPortalRAMP1
AceView (NCBI)RAMP1
Genatlas (Paris)RAMP1
WikiGenes10267
SOURCE (Princeton)RAMP1
Genetics Home Reference (NIH)RAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)RAMP1  -     chr2:237859544-237912117 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAMP1  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblRAMP1 - 2q37.3 [CytoView hg19]  RAMP1 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIRAMP1 [Mapview hg19]  RAMP1 [Mapview hg38]
OMIM605153   
Gene and transcription
Genbank (Entrez)AI017108 AJ001014 AY265457 BC000548 BI548986
RefSeq transcript (Entrez)NM_001308353 NM_005855
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAMP1
Cluster EST : UnigeneHs.471783 [ NCBI ]
CGAP (NCI)Hs.471783
Alternative Splicing GalleryENSG00000132329
Gene ExpressionRAMP1 [ NCBI-GEO ]   RAMP1 [ EBI - ARRAY_EXPRESS ]   RAMP1 [ SEEK ]   RAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RAMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10267
GTEX Portal (Tissue expression)RAMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60894   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60894  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60894
Splice isoforms : SwissVarO60894
PhosPhoSitePlusO60894
Domains : Interpro (EBI)RAMP   
Domain families : Pfam (Sanger)RAMP (PF04901)   
Domain families : Pfam (NCBI)pfam04901   
Conserved Domain (NCBI)RAMP1
DMDM Disease mutations10267
Blocks (Seattle)RAMP1
PDB (SRS)2YX8    3N7P    3N7R    3N7S    4RWG   
PDB (PDBSum)2YX8    3N7P    3N7R    3N7S    4RWG   
PDB (IMB)2YX8    3N7P    3N7R    3N7S    4RWG   
PDB (RSDB)2YX8    3N7P    3N7R    3N7S    4RWG   
Structural Biology KnowledgeBase2YX8    3N7P    3N7R    3N7S    4RWG   
SCOP (Structural Classification of Proteins)2YX8    3N7P    3N7R    3N7S    4RWG   
CATH (Classification of proteins structures)2YX8    3N7P    3N7R    3N7S    4RWG   
SuperfamilyO60894
Human Protein AtlasENSG00000132329
Peptide AtlasO60894
HPRD05515
IPIIPI00032420   IPI00877599   
Protein Interaction databases
DIP (DOE-UCLA)O60894
IntAct (EBI)O60894
FunCoupENSG00000132329
BioGRIDRAMP1
STRING (EMBL)RAMP1
ZODIACRAMP1
Ontologies - Pathways
QuickGOO60894
Ontology : AmiGOangiogenesis  receptor activity  calcitonin receptor activity  protein binding  extracellular space  intracellular  plasma membrane  plasma membrane  plasma membrane  integral component of plasma membrane  calcium ion transport  intracellular protein transport  G-protein coupled receptor signaling pathway  regulation of G-protein coupled receptor protein signaling pathway  protein transporter activity  cell surface  coreceptor activity  protein transport  positive regulation of cAMP biosynthetic process  positive regulation of cAMP biosynthetic process  receptor internalization  calcitonin receptor binding  receptor complex  positive regulation of protein glycosylation  protein localization to plasma membrane  
Ontology : EGO-EBIangiogenesis  receptor activity  calcitonin receptor activity  protein binding  extracellular space  intracellular  plasma membrane  plasma membrane  plasma membrane  integral component of plasma membrane  calcium ion transport  intracellular protein transport  G-protein coupled receptor signaling pathway  regulation of G-protein coupled receptor protein signaling pathway  protein transporter activity  cell surface  coreceptor activity  protein transport  positive regulation of cAMP biosynthetic process  positive regulation of cAMP biosynthetic process  receptor internalization  calcitonin receptor binding  receptor complex  positive regulation of protein glycosylation  protein localization to plasma membrane  
Pathways : KEGGVascular smooth muscle contraction   
NDEx NetworkRAMP1
Atlas of Cancer Signalling NetworkRAMP1
Wikipedia pathwaysRAMP1
Orthology - Evolution
OrthoDB10267
GeneTree (enSembl)ENSG00000132329
Phylogenetic Trees/Animal Genes : TreeFamRAMP1
HOVERGENO60894
HOGENOMO60894
Homologs : HomoloGeneRAMP1
Homology/Alignments : Family Browser (UCSC)RAMP1
Gene fusions - Rearrangements
Fusion : MitelmanRAMP1/RBM44 [2q37.3/2q37.3]  
Fusion: TCGARAMP1 2q37.3 RBM44 2q37.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAMP1
dbVarRAMP1
ClinVarRAMP1
1000_GenomesRAMP1 
Exome Variant ServerRAMP1
ExAC (Exome Aggregation Consortium)RAMP1 (select the gene name)
Genetic variants : HAPMAP10267
Genomic Variants (DGV)RAMP1 [DGVbeta]
DECIPHERRAMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAMP1 
Mutations
ICGC Data PortalRAMP1 
TCGA Data PortalRAMP1 
Broad Tumor PortalRAMP1
OASIS PortalRAMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAMP1
DgiDB (Drug Gene Interaction Database)RAMP1
DoCM (Curated mutations)RAMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAMP1 (select a term)
intoGenRAMP1
Cancer3DRAMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605153   
Orphanet
MedgenRAMP1
Genetic Testing Registry RAMP1
NextProtO60894 [Medical]
TSGene10267
GENETestsRAMP1
Target ValidationRAMP1
Huge Navigator RAMP1 [HugePedia]
snp3D : Map Gene to Disease10267
BioCentury BCIQRAMP1
ClinGenRAMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10267
Chemical/Pharm GKB GenePA34202
Clinical trialRAMP1
Miscellaneous
canSAR (ICR)RAMP1 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAMP1
EVEXRAMP1
GoPubMedRAMP1
iHOPRAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:12:32 CEST 2017

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