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RAMP3 (receptor activity modifying protein 3)

Identity

Alias_namesreceptor activity modifying protein 3
receptor (calcitonin) activity modifying protein 3
receptor (G protein-coupled) activity modifying protein 3
Other alias-
HGNC (Hugo) RAMP3
LocusID (NCBI) 10268
Atlas_Id 52142
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 45157768 and ends at 45184251 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAMP3 (7p13) / RAMP3 (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAMP3   9845
Cards
Entrez_Gene (NCBI)RAMP3  10268  receptor activity modifying protein 3
Aliases
GeneCards (Weizmann)RAMP3
Ensembl hg19 (Hinxton)ENSG00000122679 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122679 [Gene_View]  chr7:45157768-45184251 [Contig_View]  RAMP3 [Vega]
ICGC DataPortalENSG00000122679
TCGA cBioPortalRAMP3
AceView (NCBI)RAMP3
Genatlas (Paris)RAMP3
WikiGenes10268
SOURCE (Princeton)RAMP3
Genetics Home Reference (NIH)RAMP3
Genomic and cartography
GoldenPath hg38 (UCSC)RAMP3  -     chr7:45157768-45184251 +  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAMP3  -     7p13   [Description]    (hg19-Feb_2009)
EnsemblRAMP3 - 7p13 [CytoView hg19]  RAMP3 - 7p13 [CytoView hg38]
Mapping of homologs : NCBIRAMP3 [Mapview hg19]  RAMP3 [Mapview hg38]
OMIM605155   
Gene and transcription
Genbank (Entrez)AJ001016 AK128765 AK222469 AK311871 AY265459
RefSeq transcript (Entrez)NM_005856
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAMP3
Cluster EST : UnigeneHs.25691 [ NCBI ]
CGAP (NCI)Hs.25691
Alternative Splicing GalleryENSG00000122679
Gene ExpressionRAMP3 [ NCBI-GEO ]   RAMP3 [ EBI - ARRAY_EXPRESS ]   RAMP3 [ SEEK ]   RAMP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RAMP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10268
GTEX Portal (Tissue expression)RAMP3
Human Protein AtlasENSG00000122679-RAMP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60896   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60896  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60896
Splice isoforms : SwissVarO60896
PhosPhoSitePlusO60896
Domains : Interpro (EBI)RAMP   
Domain families : Pfam (Sanger)RAMP (PF04901)   
Domain families : Pfam (NCBI)pfam04901   
Conserved Domain (NCBI)RAMP3
DMDM Disease mutations10268
Blocks (Seattle)RAMP3
SuperfamilyO60896
Human Protein Atlas [tissue]ENSG00000122679-RAMP3 [tissue]
Peptide AtlasO60896
HPRD05517
IPIIPI00032425   IPI00977702   IPI00945270   
Protein Interaction databases
DIP (DOE-UCLA)O60896
IntAct (EBI)O60896
FunCoupENSG00000122679
BioGRIDRAMP3
STRING (EMBL)RAMP3
ZODIACRAMP3
Ontologies - Pathways
QuickGOO60896
Ontology : AmiGOpositive regulation of receptor recycling  receptor activity  protein binding  intracellular  lysosome  plasma membrane  plasma membrane  plasma membrane  integral component of plasma membrane  calcium ion transport  intracellular protein transport  regulation of G-protein coupled receptor protein signaling pathway  protein transporter activity  cell surface  coreceptor activity  protein transport  receptor internalization  receptor complex  negative regulation of transcription, DNA-templated  cellular response to estradiol stimulus  protein localization to plasma membrane  G-protein coupled receptor signaling pathway involved in heart process  positive regulation of establishment of protein localization to plasma membrane  
Ontology : EGO-EBIpositive regulation of receptor recycling  receptor activity  protein binding  intracellular  lysosome  plasma membrane  plasma membrane  plasma membrane  integral component of plasma membrane  calcium ion transport  intracellular protein transport  regulation of G-protein coupled receptor protein signaling pathway  protein transporter activity  cell surface  coreceptor activity  protein transport  receptor internalization  receptor complex  negative regulation of transcription, DNA-templated  cellular response to estradiol stimulus  protein localization to plasma membrane  G-protein coupled receptor signaling pathway involved in heart process  positive regulation of establishment of protein localization to plasma membrane  
Pathways : KEGGVascular smooth muscle contraction   
NDEx NetworkRAMP3
Atlas of Cancer Signalling NetworkRAMP3
Wikipedia pathwaysRAMP3
Orthology - Evolution
OrthoDB10268
GeneTree (enSembl)ENSG00000122679
Phylogenetic Trees/Animal Genes : TreeFamRAMP3
HOVERGENO60896
HOGENOMO60896
Homologs : HomoloGeneRAMP3
Homology/Alignments : Family Browser (UCSC)RAMP3
Gene fusions - Rearrangements
Fusion: Tumor Portal RAMP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAMP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAMP3
dbVarRAMP3
ClinVarRAMP3
1000_GenomesRAMP3 
Exome Variant ServerRAMP3
ExAC (Exome Aggregation Consortium)ENSG00000122679
GNOMAD BrowserENSG00000122679
Genetic variants : HAPMAP10268
Genomic Variants (DGV)RAMP3 [DGVbeta]
DECIPHERRAMP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAMP3 
Mutations
ICGC Data PortalRAMP3 
TCGA Data PortalRAMP3 
Broad Tumor PortalRAMP3
OASIS PortalRAMP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAMP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAMP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAMP3
DgiDB (Drug Gene Interaction Database)RAMP3
DoCM (Curated mutations)RAMP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAMP3 (select a term)
intoGenRAMP3
Cancer3DRAMP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605155   
Orphanet
MedgenRAMP3
Genetic Testing Registry RAMP3
NextProtO60896 [Medical]
TSGene10268
GENETestsRAMP3
Target ValidationRAMP3
Huge Navigator RAMP3 [HugePedia]
snp3D : Map Gene to Disease10268
BioCentury BCIQRAMP3
ClinGenRAMP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10268
Chemical/Pharm GKB GenePA34204
Clinical trialRAMP3
Miscellaneous
canSAR (ICR)RAMP3 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAMP3
EVEXRAMP3
GoPubMedRAMP3
iHOPRAMP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:07:58 CET 2017

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