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RANBP1 (RAN binding protein 1)

Identity

Alias_symbol (synonym)HTF9A
Other alias
HGNC (Hugo) RANBP1
LocusID (NCBI) 5902
Atlas_Id 53618
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 20115938 and ends at 20127357 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RANBP1 (22q11.21) / DRICH1 (22q11.23)RANBP1 (22q11.21) / MINK1 (17p13.2)RANBP1 (22q11.21) / NUMB (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RANBP1   9847
Cards
Entrez_Gene (NCBI)RANBP1  5902  RAN binding protein 1
AliasesHTF9A
GeneCards (Weizmann)RANBP1
Ensembl hg19 (Hinxton)ENSG00000099901 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099901 [Gene_View]  chr22:20115938-20127357 [Contig_View]  RANBP1 [Vega]
ICGC DataPortalENSG00000099901
TCGA cBioPortalRANBP1
AceView (NCBI)RANBP1
Genatlas (Paris)RANBP1
WikiGenes5902
SOURCE (Princeton)RANBP1
Genetics Home Reference (NIH)RANBP1
Genomic and cartography
GoldenPath hg38 (UCSC)RANBP1  -     chr22:20115938-20127357 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RANBP1  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblRANBP1 - 22q11.21 [CytoView hg19]  RANBP1 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIRANBP1 [Mapview hg19]  RANBP1 [Mapview hg38]
OMIM601180   
Gene and transcription
Genbank (Entrez)AK094410 AK097659 AK223506 AK293502 AK300927
RefSeq transcript (Entrez)NM_001278639 NM_001278640 NM_001278641 NM_002882
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RANBP1
Cluster EST : UnigeneHs.24763 [ NCBI ]
CGAP (NCI)Hs.24763
Alternative Splicing GalleryENSG00000099901
Gene ExpressionRANBP1 [ NCBI-GEO ]   RANBP1 [ EBI - ARRAY_EXPRESS ]   RANBP1 [ SEEK ]   RANBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RANBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5902
GTEX Portal (Tissue expression)RANBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43487   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43487  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43487
Splice isoforms : SwissVarP43487
PhosPhoSitePlusP43487
Domaine pattern : Prosite (Expaxy)RANBD1 (PS50196)   
Domains : Interpro (EBI)PH_dom-like    Ran_bind_dom   
Domain families : Pfam (Sanger)Ran_BP1 (PF00638)   
Domain families : Pfam (NCBI)pfam00638   
Domain families : Smart (EMBL)RanBD (SM00160)  
Conserved Domain (NCBI)RANBP1
DMDM Disease mutations5902
Blocks (Seattle)RANBP1
PDB (SRS)1K5D    1K5G   
PDB (PDBSum)1K5D    1K5G   
PDB (IMB)1K5D    1K5G   
PDB (RSDB)1K5D    1K5G   
Structural Biology KnowledgeBase1K5D    1K5G   
SCOP (Structural Classification of Proteins)1K5D    1K5G   
CATH (Classification of proteins structures)1K5D    1K5G   
SuperfamilyP43487
Human Protein AtlasENSG00000099901
Peptide AtlasP43487
HPRD03110
IPIIPI00414127   IPI00878950   IPI00878075   IPI00878044   IPI00878440   IPI00878795   IPI01015397   IPI00879160   IPI01014561   IPI00879666   
Protein Interaction databases
DIP (DOE-UCLA)P43487
IntAct (EBI)P43487
FunCoupENSG00000099901
BioGRIDRANBP1
STRING (EMBL)RANBP1
ZODIACRANBP1
Ontologies - Pathways
QuickGOP43487
Ontology : AmiGOG1/S transition of mitotic cell cycle  GDP-dissociation inhibitor activity  GTPase activator activity  protein binding  nucleus  nuclear envelope  cytoplasm  cytoplasm  centrosome  cytosol  RNA export from nucleus  ubiquitin-dependent protein catabolic process  protein import into nucleus  spindle organization  signal transduction  Ran GTPase binding  viral process  positive regulation of GTPase activity  cadherin binding  positive regulation of mitotic centrosome separation  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  GDP-dissociation inhibitor activity  GTPase activator activity  protein binding  nucleus  nuclear envelope  cytoplasm  cytoplasm  centrosome  cytosol  RNA export from nucleus  ubiquitin-dependent protein catabolic process  protein import into nucleus  spindle organization  signal transduction  Ran GTPase binding  viral process  positive regulation of GTPase activity  cadherin binding  positive regulation of mitotic centrosome separation  
Pathways : BIOCARTACycling of Ran in nucleocytoplasmic transport [Genes]    Role of Ran in mitotic spindle regulation [Genes]   
Pathways : KEGGHTLV-I infection    Viral carcinogenesis   
NDEx NetworkRANBP1
Atlas of Cancer Signalling NetworkRANBP1
Wikipedia pathwaysRANBP1
Orthology - Evolution
OrthoDB5902
GeneTree (enSembl)ENSG00000099901
Phylogenetic Trees/Animal Genes : TreeFamRANBP1
HOVERGENP43487
HOGENOMP43487
Homologs : HomoloGeneRANBP1
Homology/Alignments : Family Browser (UCSC)RANBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRANBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RANBP1
dbVarRANBP1
ClinVarRANBP1
1000_GenomesRANBP1 
Exome Variant ServerRANBP1
ExAC (Exome Aggregation Consortium)RANBP1 (select the gene name)
Genetic variants : HAPMAP5902
Genomic Variants (DGV)RANBP1 [DGVbeta]
DECIPHERRANBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRANBP1 
Mutations
ICGC Data PortalRANBP1 
TCGA Data PortalRANBP1 
Broad Tumor PortalRANBP1
OASIS PortalRANBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRANBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRANBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RANBP1
DgiDB (Drug Gene Interaction Database)RANBP1
DoCM (Curated mutations)RANBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RANBP1 (select a term)
intoGenRANBP1
Cancer3DRANBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601180   
Orphanet
MedgenRANBP1
Genetic Testing Registry RANBP1
NextProtP43487 [Medical]
TSGene5902
GENETestsRANBP1
Target ValidationRANBP1
Huge Navigator RANBP1 [HugePedia]
snp3D : Map Gene to Disease5902
BioCentury BCIQRANBP1
ClinGenRANBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5902
Chemical/Pharm GKB GenePA34206
Clinical trialRANBP1
Miscellaneous
canSAR (ICR)RANBP1 (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRANBP1
EVEXRANBP1
GoPubMedRANBP1
iHOPRANBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:28:00 CEST 2017

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