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RANBP17 (RAN binding protein 17)

Identity

Other alias-
HGNC (Hugo) RANBP17
LocusID (NCBI) 64901
Atlas_Id 399
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 170288886 and ends at 170727019 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ERGIC1 (5q35.1) / RANBP17 (5q35.1)RANBP17 (5q35.1) / GABRP (5q35.1)RANBP17 (5q35.1) / RANBP17 (5q35.1)
RANBP17 (5q35.1) / SPDL1 (5q35.1)RANBP17 (5q35.1) / TRBV20OR9-2 ()RANBP17 (5q35.1) / TRD ()
TLX3 (5q35.1) / RANBP17 (5q35.1)TRA () / RANBP17 (5q35.1)TRD () / RANBP17 (5q35.1)
ERGIC1 5q35.1 / RANBP17 5q35.1RANBP17 5q35.1 CCDC99RANBP17 5q35.1 / GABRP 5q35.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(5;14)(q35;q11) RANBP17 (or TLX3)/TRD
t(5;14)(q35;q32) BCL11B/TLX3
t(5;14)(q35;q32.2) BCL11B/TLX3 and NKX2-5


External links

Nomenclature
HGNC (Hugo)RANBP17   14428
Cards
Entrez_Gene (NCBI)RANBP17  64901  RAN binding protein 17
Aliases
GeneCards (Weizmann)RANBP17
Ensembl hg19 (Hinxton)ENSG00000204764 [Gene_View]  chr5:170288886-170727019 [Contig_View]  RANBP17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204764 [Gene_View]  chr5:170288886-170727019 [Contig_View]  RANBP17 [Vega]
ICGC DataPortalENSG00000204764
TCGA cBioPortalRANBP17
AceView (NCBI)RANBP17
Genatlas (Paris)RANBP17
WikiGenes64901
SOURCE (Princeton)RANBP17
Genetics Home Reference (NIH)RANBP17
Genomic and cartography
GoldenPath hg19 (UCSC)RANBP17  -     chr5:170288886-170727019 +  5q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RANBP17  -     5q35.1   [Description]    (hg38-Dec_2013)
EnsemblRANBP17 - 5q35.1 [CytoView hg19]  RANBP17 - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBIRANBP17 [Mapview hg19]  RANBP17 [Mapview hg38]
OMIM606141   
Gene and transcription
Genbank (Entrez)AF222747 AJ271459 AJ288952 AJ288953 AJ288954
RefSeq transcript (Entrez)NM_022897
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)RANBP17
Cluster EST : UnigeneHs.410810 [ NCBI ]
CGAP (NCI)Hs.410810
Alternative Splicing GalleryENSG00000204764
Gene ExpressionRANBP17 [ NCBI-GEO ]   RANBP17 [ EBI - ARRAY_EXPRESS ]   RANBP17 [ SEEK ]   RANBP17 [ MEM ]
Gene Expression Viewer (FireBrowse)RANBP17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64901
GTEX Portal (Tissue expression)RANBP17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2T7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2T7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2T7
Splice isoforms : SwissVarQ9H2T7
PhosPhoSitePlusQ9H2T7
Domains : Interpro (EBI)ARM-type_fold    Importin-beta_N   
Domain families : Pfam (Sanger)IBN_N (PF03810)   
Domain families : Pfam (NCBI)pfam03810   
Domain families : Smart (EMBL)IBN_N (SM00913)  
Conserved Domain (NCBI)RANBP17
DMDM Disease mutations64901
Blocks (Seattle)RANBP17
SuperfamilyQ9H2T7
Human Protein AtlasENSG00000204764
Peptide AtlasQ9H2T7
HPRD05847
IPIIPI00009645   IPI00908735   IPI00979887   IPI01009721   IPI00978790   IPI00976814   IPI00977396   IPI00977980   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2T7
IntAct (EBI)Q9H2T7
FunCoupENSG00000204764
BioGRIDRANBP17
STRING (EMBL)RANBP17
ZODIACRANBP17
Ontologies - Pathways
QuickGOQ9H2T7
Ontology : AmiGOnuclear export signal receptor activity  GTP binding  nuclear pore  nuclear pore  cytoplasm  protein import into nucleus  protein export from nucleus  Ran GTPase binding  mRNA transport  
Ontology : EGO-EBInuclear export signal receptor activity  GTP binding  nuclear pore  nuclear pore  cytoplasm  protein import into nucleus  protein export from nucleus  Ran GTPase binding  mRNA transport  
NDEx NetworkRANBP17
Atlas of Cancer Signalling NetworkRANBP17
Wikipedia pathwaysRANBP17
Orthology - Evolution
OrthoDB64901
GeneTree (enSembl)ENSG00000204764
Phylogenetic Trees/Animal Genes : TreeFamRANBP17
HOVERGENQ9H2T7
HOGENOMQ9H2T7
Homologs : HomoloGeneRANBP17
Homology/Alignments : Family Browser (UCSC)RANBP17
Gene fusions - Rearrangements
Fusion : MitelmanERGIC1/RANBP17 [5q35.1/5q35.1]  [t(5;5)(q35;q35)]  
Fusion : MitelmanRANBP17/GABRP [5q35.1/5q35.1]  [t(5;5)(q35;q35)]  
Fusion : MitelmanRANBP17/SPDL1 [5q35.1/5q35.1]  [t(5;5)(q35;q35)]  
Fusion : MitelmanTLX3/RANBP17 [5q35.1/5q35.1]  [t(5;5)(q35;q35)]  
Fusion : MitelmanTRD/RANBP17 [-/5q35.1]  [t(5;14)(q35;q11)]  
Fusion: TCGAERGIC1 5q35.1 RANBP17 5q35.1 LUSC
Fusion: TCGARANBP17 5q35.1 CCDC99 BRCA
Fusion: TCGARANBP17 5q35.1 GABRP 5q35.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRANBP17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RANBP17
dbVarRANBP17
ClinVarRANBP17
1000_GenomesRANBP17 
Exome Variant ServerRANBP17
ExAC (Exome Aggregation Consortium)RANBP17 (select the gene name)
Genetic variants : HAPMAP64901
Genomic Variants (DGV)RANBP17 [DGVbeta]
DECIPHER (Syndromes)5:170288886-170727019  ENSG00000204764
CONAN: Copy Number AnalysisRANBP17 
Mutations
ICGC Data PortalRANBP17 
TCGA Data PortalRANBP17 
Broad Tumor PortalRANBP17
OASIS PortalRANBP17 [ Somatic mutations - Copy number]
Cancer Gene: CensusRANBP17 
Somatic Mutations in Cancer : COSMICRANBP17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRANBP17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RANBP17
DgiDB (Drug Gene Interaction Database)RANBP17
DoCM (Curated mutations)RANBP17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RANBP17 (select a term)
intoGenRANBP17
Cancer3DRANBP17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606141   
Orphanet
MedgenRANBP17
Genetic Testing Registry RANBP17
NextProtQ9H2T7 [Medical]
TSGene64901
GENETestsRANBP17
Huge Navigator RANBP17 [HugePedia]
snp3D : Map Gene to Disease64901
BioCentury BCIQRANBP17
ClinGenRANBP17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64901
Chemical/Pharm GKB GenePA34208
Clinical trialRANBP17
Miscellaneous
canSAR (ICR)RANBP17 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRANBP17
EVEXRANBP17
GoPubMedRANBP17
iHOPRANBP17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:50 CEST 2017

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