Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RANBP3 (RAN binding protein 3)

Identity

Other alias-
HGNC (Hugo) RANBP3
LocusID (NCBI) 8498
Atlas_Id 43444
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5916141 and ends at 5978309 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOTAIRM1 (7p15.2) / RANBP3 (19p13.3)RANBP3 (19p13.3) / EEF1AKMT1 (13q12.11)RANBP3 (19p13.3) / LTA4H (12q23.1)
RANBP3 (19p13.3) / MLLT1 (19p13.3)RANBP3 (19p13.3) / PIP5K1C (19p13.3)RANBP3 (19p13.3) / RFX2 (19p13.3)
RANBP3 19p13.3 / MLLT1 19p13.3RANBP3 19p13.3 / N6AMT2 13q12.11RANBP3 19p13.3 / PIP5K1C 19p13.3
RANBP3 19p13.3 / RFX2 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RANBP3   9850
Cards
Entrez_Gene (NCBI)RANBP3  8498  RAN binding protein 3
Aliases
GeneCards (Weizmann)RANBP3
Ensembl hg19 (Hinxton)ENSG00000031823 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000031823 [Gene_View]  chr19:5916141-5978309 [Contig_View]  RANBP3 [Vega]
ICGC DataPortalENSG00000031823
TCGA cBioPortalRANBP3
AceView (NCBI)RANBP3
Genatlas (Paris)RANBP3
WikiGenes8498
SOURCE (Princeton)RANBP3
Genetics Home Reference (NIH)RANBP3
Genomic and cartography
GoldenPath hg38 (UCSC)RANBP3  -     chr19:5916141-5978309 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RANBP3  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblRANBP3 - 19p13.3 [CytoView hg19]  RANBP3 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIRANBP3 [Mapview hg19]  RANBP3 [Mapview hg38]
OMIM603327   
Gene and transcription
Genbank (Entrez)AK025300 AK125183 AK222813 AK222990 AK299260
RefSeq transcript (Entrez)NM_001300865 NM_003624 NM_007320 NM_007321 NM_007322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RANBP3
Cluster EST : UnigeneHs.531752 [ NCBI ]
CGAP (NCI)Hs.531752
Alternative Splicing GalleryENSG00000031823
Gene ExpressionRANBP3 [ NCBI-GEO ]   RANBP3 [ EBI - ARRAY_EXPRESS ]   RANBP3 [ SEEK ]   RANBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RANBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8498
GTEX Portal (Tissue expression)RANBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6Z4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6Z4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6Z4
Splice isoforms : SwissVarQ9H6Z4
PhosPhoSitePlusQ9H6Z4
Domaine pattern : Prosite (Expaxy)RANBD1 (PS50196)   
Domains : Interpro (EBI)PH_dom-like    Ran_bind_dom   
Domain families : Pfam (Sanger)Ran_BP1 (PF00638)   
Domain families : Pfam (NCBI)pfam00638   
Domain families : Smart (EMBL)RanBD (SM00160)  
Conserved Domain (NCBI)RANBP3
DMDM Disease mutations8498
Blocks (Seattle)RANBP3
PDB (SRS)2CRF    2Y8F    2Y8G   
PDB (PDBSum)2CRF    2Y8F    2Y8G   
PDB (IMB)2CRF    2Y8F    2Y8G   
PDB (RSDB)2CRF    2Y8F    2Y8G   
Structural Biology KnowledgeBase2CRF    2Y8F    2Y8G   
SCOP (Structural Classification of Proteins)2CRF    2Y8F    2Y8G   
CATH (Classification of proteins structures)2CRF    2Y8F    2Y8G   
SuperfamilyQ9H6Z4
Human Protein AtlasENSG00000031823
Peptide AtlasQ9H6Z4
HPRD04508
IPIIPI00026337   IPI00456728   IPI00456729   IPI00179121   IPI01010773   IPI00026336   IPI00874033   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6Z4
IntAct (EBI)Q9H6Z4
FunCoupENSG00000031823
BioGRIDRANBP3
STRING (EMBL)RANBP3
ZODIACRANBP3
Ontologies - Pathways
QuickGOQ9H6Z4
Ontology : AmiGOG1/S transition of mitotic cell cycle  GTPase activator activity  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  centrosome  RNA export from nucleus  ubiquitin-dependent protein catabolic process  protein import into nucleus  spindle organization  Ran GTPase binding  positive regulation of GTPase activity  positive regulation of mitotic centrosome separation  R-SMAD binding  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  GTPase activator activity  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  centrosome  RNA export from nucleus  ubiquitin-dependent protein catabolic process  protein import into nucleus  spindle organization  Ran GTPase binding  positive regulation of GTPase activity  positive regulation of mitotic centrosome separation  R-SMAD binding  
Pathways : KEGGHTLV-I infection   
NDEx NetworkRANBP3
Atlas of Cancer Signalling NetworkRANBP3
Wikipedia pathwaysRANBP3
Orthology - Evolution
OrthoDB8498
GeneTree (enSembl)ENSG00000031823
Phylogenetic Trees/Animal Genes : TreeFamRANBP3
HOVERGENQ9H6Z4
HOGENOMQ9H6Z4
Homologs : HomoloGeneRANBP3
Homology/Alignments : Family Browser (UCSC)RANBP3
Gene fusions - Rearrangements
Fusion : MitelmanRANBP3/MLLT1 [19p13.3/19p13.3]  
Fusion : MitelmanRANBP3/N6AMT2 [19p13.3/13q12.11]  [t(13;19)(q12;p13)]  
Fusion : MitelmanRANBP3/PIP5K1C [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion : MitelmanRANBP3/RFX2 [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion: TCGARANBP3 19p13.3 MLLT1 19p13.3 PRAD
Fusion: TCGARANBP3 19p13.3 N6AMT2 13q12.11 BRCA
Fusion: TCGARANBP3 19p13.3 PIP5K1C 19p13.3 BRCA
Fusion: TCGARANBP3 19p13.3 RFX2 19p13.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRANBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RANBP3
dbVarRANBP3
ClinVarRANBP3
1000_GenomesRANBP3 
Exome Variant ServerRANBP3
ExAC (Exome Aggregation Consortium)RANBP3 (select the gene name)
Genetic variants : HAPMAP8498
Genomic Variants (DGV)RANBP3 [DGVbeta]
DECIPHERRANBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRANBP3 
Mutations
ICGC Data PortalRANBP3 
TCGA Data PortalRANBP3 
Broad Tumor PortalRANBP3
OASIS PortalRANBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRANBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRANBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RANBP3
DgiDB (Drug Gene Interaction Database)RANBP3
DoCM (Curated mutations)RANBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RANBP3 (select a term)
intoGenRANBP3
Cancer3DRANBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603327   
Orphanet
MedgenRANBP3
Genetic Testing Registry RANBP3
NextProtQ9H6Z4 [Medical]
TSGene8498
GENETestsRANBP3
Target ValidationRANBP3
Huge Navigator RANBP3 [HugePedia]
snp3D : Map Gene to Disease8498
BioCentury BCIQRANBP3
ClinGenRANBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8498
Chemical/Pharm GKB GenePA34211
Clinical trialRANBP3
Miscellaneous
canSAR (ICR)RANBP3 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRANBP3
EVEXRANBP3
GoPubMedRANBP3
iHOPRANBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:52:29 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.