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RANBP3L (RAN binding protein 3 like)

Identity

Alias_namesRAN binding protein 3-like
Alias_symbol (synonym)FLJ25422
Other alias-
HGNC (Hugo) RANBP3L
LocusID (NCBI) 202151
Atlas_Id 72482
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 36246919 and ends at 36301909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EPC2 (2q23.1) / RANBP3L (5p13.2)RICTOR (5p13.1) / RANBP3L (5p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RANBP3L   26353
Cards
Entrez_Gene (NCBI)RANBP3L  202151  RAN binding protein 3 like
Aliases
GeneCards (Weizmann)RANBP3L
Ensembl hg19 (Hinxton)ENSG00000164188 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164188 [Gene_View]  chr5:36246919-36301909 [Contig_View]  RANBP3L [Vega]
ICGC DataPortalENSG00000164188
TCGA cBioPortalRANBP3L
AceView (NCBI)RANBP3L
Genatlas (Paris)RANBP3L
WikiGenes202151
SOURCE (Princeton)RANBP3L
Genetics Home Reference (NIH)RANBP3L
Genomic and cartography
GoldenPath hg38 (UCSC)RANBP3L  -     chr5:36246919-36301909 -  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RANBP3L  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblRANBP3L - 5p13.2 [CytoView hg19]  RANBP3L - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBIRANBP3L [Mapview hg19]  RANBP3L [Mapview hg38]
OMIM616391   
Gene and transcription
Genbank (Entrez)AK058151 AK302947 BC017951 BC047660 BQ774461
RefSeq transcript (Entrez)NM_001161429 NM_001323273 NM_001323274 NM_001323275 NM_001323276 NM_001323277 NM_001323278 NM_001323279 NM_001323280 NM_145000
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RANBP3L
Cluster EST : UnigeneHs.729817 [ NCBI ]
CGAP (NCI)Hs.729817
Alternative Splicing GalleryENSG00000164188
Gene ExpressionRANBP3L [ NCBI-GEO ]   RANBP3L [ EBI - ARRAY_EXPRESS ]   RANBP3L [ SEEK ]   RANBP3L [ MEM ]
Gene Expression Viewer (FireBrowse)RANBP3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202151
GTEX Portal (Tissue expression)RANBP3L
Human Protein AtlasENSG00000164188-RANBP3L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VV4
Splice isoforms : SwissVarQ86VV4
PhosPhoSitePlusQ86VV4
Domaine pattern : Prosite (Expaxy)RANBD1 (PS50196)   
Domains : Interpro (EBI)PH_dom-like    Ran_bind_dom   
Domain families : Pfam (Sanger)Ran_BP1 (PF00638)   
Domain families : Pfam (NCBI)pfam00638   
Domain families : Smart (EMBL)RanBD (SM00160)  
Conserved Domain (NCBI)RANBP3L
DMDM Disease mutations202151
Blocks (Seattle)RANBP3L
SuperfamilyQ86VV4
Human Protein Atlas [tissue]ENSG00000164188-RANBP3L [tissue]
Peptide AtlasQ86VV4
HPRD08064
IPIIPI00328996   IPI00643706   IPI00922543   IPI00967856   
Protein Interaction databases
DIP (DOE-UCLA)Q86VV4
IntAct (EBI)Q86VV4
FunCoupENSG00000164188
BioGRIDRANBP3L
STRING (EMBL)RANBP3L
ZODIACRANBP3L
Ontologies - Pathways
QuickGOQ86VV4
Ontology : AmiGOG1/S transition of mitotic cell cycle  GTPase activator activity  nucleus  cytoplasm  centrosome  RNA export from nucleus  ubiquitin-dependent protein catabolic process  protein import into nucleus  spindle organization  Ran GTPase binding  positive regulation of GTPase activity  positive regulation of myoblast differentiation  negative regulation of osteoblast differentiation  SMAD binding  positive regulation of mitotic centrosome separation  mesenchymal cell differentiation involved in bone development  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  GTPase activator activity  nucleus  cytoplasm  centrosome  RNA export from nucleus  ubiquitin-dependent protein catabolic process  protein import into nucleus  spindle organization  Ran GTPase binding  positive regulation of GTPase activity  positive regulation of myoblast differentiation  negative regulation of osteoblast differentiation  SMAD binding  positive regulation of mitotic centrosome separation  mesenchymal cell differentiation involved in bone development  
NDEx NetworkRANBP3L
Atlas of Cancer Signalling NetworkRANBP3L
Wikipedia pathwaysRANBP3L
Orthology - Evolution
OrthoDB202151
GeneTree (enSembl)ENSG00000164188
Phylogenetic Trees/Animal Genes : TreeFamRANBP3L
HOVERGENQ86VV4
HOGENOMQ86VV4
Homologs : HomoloGeneRANBP3L
Homology/Alignments : Family Browser (UCSC)RANBP3L
Gene fusions - Rearrangements
Tumor Fusion PortalRANBP3L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRANBP3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RANBP3L
dbVarRANBP3L
ClinVarRANBP3L
1000_GenomesRANBP3L 
Exome Variant ServerRANBP3L
ExAC (Exome Aggregation Consortium)ENSG00000164188
GNOMAD BrowserENSG00000164188
Genetic variants : HAPMAP202151
Genomic Variants (DGV)RANBP3L [DGVbeta]
DECIPHERRANBP3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRANBP3L 
Mutations
ICGC Data PortalRANBP3L 
TCGA Data PortalRANBP3L 
Broad Tumor PortalRANBP3L
OASIS PortalRANBP3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRANBP3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRANBP3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RANBP3L
DgiDB (Drug Gene Interaction Database)RANBP3L
DoCM (Curated mutations)RANBP3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RANBP3L (select a term)
intoGenRANBP3L
Cancer3DRANBP3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616391   
Orphanet
DisGeNETRANBP3L
MedgenRANBP3L
Genetic Testing Registry RANBP3L
NextProtQ86VV4 [Medical]
TSGene202151
GENETestsRANBP3L
Target ValidationRANBP3L
Huge Navigator RANBP3L [HugePedia]
snp3D : Map Gene to Disease202151
BioCentury BCIQRANBP3L
ClinGenRANBP3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202151
Chemical/Pharm GKB GenePA162400660
Clinical trialRANBP3L
Miscellaneous
canSAR (ICR)RANBP3L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRANBP3L
EVEXRANBP3L
GoPubMedRANBP3L
iHOPRANBP3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:12:54 CET 2017

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