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RANBP6 (RAN binding protein 6)

Identity

Other alias-
HGNC (Hugo) RANBP6
LocusID (NCBI) 26953
Atlas_Id 55492
Location 9p24.1  [Link to chromosome band 9p24]
Location_base_pair Starts at 6011019 and ends at 6015640 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NBEA (13q13.3) / RANBP6 (9p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RANBP6   9851
Cards
Entrez_Gene (NCBI)RANBP6  26953  RAN binding protein 6
Aliases
GeneCards (Weizmann)RANBP6
Ensembl hg19 (Hinxton)ENSG00000137040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137040 [Gene_View]  chr9:6011019-6015640 [Contig_View]  RANBP6 [Vega]
ICGC DataPortalENSG00000137040
TCGA cBioPortalRANBP6
AceView (NCBI)RANBP6
Genatlas (Paris)RANBP6
WikiGenes26953
SOURCE (Princeton)RANBP6
Genetics Home Reference (NIH)RANBP6
Genomic and cartography
GoldenPath hg38 (UCSC)RANBP6  -     chr9:6011019-6015640 -  9p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RANBP6  -     9p24.1   [Description]    (hg19-Feb_2009)
EnsemblRANBP6 - 9p24.1 [CytoView hg19]  RANBP6 - 9p24.1 [CytoView hg38]
Mapping of homologs : NCBIRANBP6 [Mapview hg19]  RANBP6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF039023 AI568841 AK001982 AK300408 AK304559
RefSeq transcript (Entrez)NM_001243202 NM_001243203 NM_012416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RANBP6
Cluster EST : UnigeneHs.732683 [ NCBI ]
CGAP (NCI)Hs.732683
Alternative Splicing GalleryENSG00000137040
Gene ExpressionRANBP6 [ NCBI-GEO ]   RANBP6 [ EBI - ARRAY_EXPRESS ]   RANBP6 [ SEEK ]   RANBP6 [ MEM ]
Gene Expression Viewer (FireBrowse)RANBP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26953
GTEX Portal (Tissue expression)RANBP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60518   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60518  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60518
Splice isoforms : SwissVarO60518
PhosPhoSitePlusO60518
Domains : Interpro (EBI)ARM-like    ARM-type_fold    HEAT   
Domain families : Pfam (Sanger)HEAT (PF02985)   
Domain families : Pfam (NCBI)pfam02985   
Conserved Domain (NCBI)RANBP6
DMDM Disease mutations26953
Blocks (Seattle)RANBP6
SuperfamilyO60518
Human Protein AtlasENSG00000137040
Peptide AtlasO60518
HPRD17953
IPIIPI00514622   
Protein Interaction databases
DIP (DOE-UCLA)O60518
IntAct (EBI)O60518
FunCoupENSG00000137040
BioGRIDRANBP6
STRING (EMBL)RANBP6
ZODIACRANBP6
Ontologies - Pathways
QuickGOO60518
Ontology : AmiGOprotein import into nucleus, translocation  protein binding  cytoplasm  NLS-bearing protein import into nucleus  ribosomal protein import into nucleus  nuclear localization sequence binding  protein transporter activity  nuclear membrane  nuclear periphery  
Ontology : EGO-EBIprotein import into nucleus, translocation  protein binding  cytoplasm  NLS-bearing protein import into nucleus  ribosomal protein import into nucleus  nuclear localization sequence binding  protein transporter activity  nuclear membrane  nuclear periphery  
NDEx NetworkRANBP6
Atlas of Cancer Signalling NetworkRANBP6
Wikipedia pathwaysRANBP6
Orthology - Evolution
OrthoDB26953
GeneTree (enSembl)ENSG00000137040
Phylogenetic Trees/Animal Genes : TreeFamRANBP6
HOVERGENO60518
HOGENOMO60518
Homologs : HomoloGeneRANBP6
Homology/Alignments : Family Browser (UCSC)RANBP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRANBP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RANBP6
dbVarRANBP6
ClinVarRANBP6
1000_GenomesRANBP6 
Exome Variant ServerRANBP6
ExAC (Exome Aggregation Consortium)RANBP6 (select the gene name)
Genetic variants : HAPMAP26953
Genomic Variants (DGV)RANBP6 [DGVbeta]
DECIPHERRANBP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRANBP6 
Mutations
ICGC Data PortalRANBP6 
TCGA Data PortalRANBP6 
Broad Tumor PortalRANBP6
OASIS PortalRANBP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRANBP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRANBP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RANBP6
DgiDB (Drug Gene Interaction Database)RANBP6
DoCM (Curated mutations)RANBP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RANBP6 (select a term)
intoGenRANBP6
Cancer3DRANBP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRANBP6
Genetic Testing Registry RANBP6
NextProtO60518 [Medical]
TSGene26953
GENETestsRANBP6
Huge Navigator RANBP6 [HugePedia]
snp3D : Map Gene to Disease26953
BioCentury BCIQRANBP6
ClinGenRANBP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26953
Chemical/Pharm GKB GenePA34212
Clinical trialRANBP6
Miscellaneous
canSAR (ICR)RANBP6 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRANBP6
EVEXRANBP6
GoPubMedRANBP6
iHOPRANBP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:34:12 CEST 2017

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