RARB (retinoic acid receptor, beta)

Identity

Other names	HAP
	NR1B2
	RRB2
HGNC	RARB
Location	3p24
Location_base_pair	Starts at 25444758 and ends at 25614424 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	RARB   9865
Entrez_Gene	RARB  5915  retinoic acid receptor, beta
	Cards
GeneCards	RARB
Ensembl	ENSG00000077092 [Gene_View]  RARB [Vega]
Genatlas	RARB
	Genomic and cartography
GoldenPath	RARB  -  3p24   chr3:25444758-25614424 +  3p24.2   [Description]    (hg18-March_2006)
Ensembl	RARB - 3p24.2 [CytoView]
NCBI	Mapview
OMIM	180220 Disease map [OMIM]
HomoloGene	RARB
	Gene and transcription
Genbank	AF157483 [ ENTREZ ]
Genbank	AK292032 [ ENTREZ ]
Genbank	AY501390 [ ENTREZ ]
Genbank	BC030234 [ ENTREZ ]
Genbank	BC050415 [ ENTREZ ]
RefSeq	NM_000965 [ SRS ]    NM_000965 [ ENTREZ ]
RefSeq	NM_016152 [ SRS ]    NM_016152 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838877 [ SRS ]    NW_001838877 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
CCDS	RARB CCDS - NCBI
AceView	RARB AceView - NCBI
Unigene	Hs.654490 [ SRS ]    Hs.654490 [ NCBI ]
Fast-db	3072 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P10826 [ SRS]    P10826 [ EXPASY ]     P10826 [ INTERPRO ]     P10826 [ UNIPROT ] P10826 [ VarSplice FASTA ]
Prosite	PS00031 NUCLEAR_REC_DBD_1 [ SRS ]    PS00031 NUCLEAR_REC_DBD_1 [ Expasy ]
Prosite	PS51030 NUCLEAR_REC_DBD_2 [ SRS ]    PS51030 NUCLEAR_REC_DBD_2 [ Expasy ]
Interpro	IPR008946 Nucl_hormone_rcpt_ligand-bd [ SRS ]    IPR008946 Nucl_hormone_rcpt_ligand-bd [ EBI ]
Interpro	IPR000536 Nucl_hrmn_rcpt_lig-bd_core [ SRS ]    IPR000536 Nucl_hrmn_rcpt_lig-bd_core [ EBI ]
Interpro	IPR003078 Retinoic_acid_rcpt [ SRS ]    IPR003078 Retinoic_acid_rcpt [ EBI ]
Interpro	IPR001723 Str_hrmn_rcpt [ SRS ]    IPR001723 Str_hrmn_rcpt [ EBI ]
Interpro	IPR001628 Znf_hrmn_rcpt [ SRS ]    IPR001628 Znf_hrmn_rcpt [ EBI ]
CluSTr	P10826
Pfam	PF00104 Hormone_recep [ SRS ]    PF00104 Hormone_recep [ Sanger ]    pfam00104 [ NCBI-CDD ]
Pfam	PF00105 zf-C4 [ SRS ]    PF00105 zf-C4 [ Sanger ]    pfam00105 [ NCBI-CDD ]
Smart	SM00430 HOLI [EMBL]
Smart	SM00399 ZnF_C4 [EMBL]
Prodom	PD000035 Znf_C4steroid[INRA-Toulouse]
Prodom	P10826 RARB_HUMAN [ Domain structure ]   P10826 RARB_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P10826
PDB	1HRA [ SRS ]    1HRA [ PdbSum ],   1HRA [ IMB ]   1HRA [ RSDB ]
PDB	1XAP [ SRS ]    1XAP [ PdbSum ],   1XAP [ IMB ]   1XAP [ RSDB ]
HPRD	07183
	Protein Interaction databases
DIP	P10826
IntAct	P10826
	Polymorphism : SNP, mutations, diseases
OMIM	180220    [ map ]
GENETests	180220
SNP	RARB [dbSNP-NCBI]
SNP	NM_000965 [SNP-NCI]
SNP	NM_016152 [SNP-NCI]
SNP	RARB [GeneSNPs - Utah]  RARB] [HGBASE - SRS]
HAPMAP	RARB [HAPMAP]
COSMIC	RARB [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	RARB
Genetic Association	RARB
CDC HuGE	RARB
	General knowledge
Family Browser	RARB [UCSC Family Browser]
SOURCE	NM_000965
SOURCE	NM_016152
SMD	Hs.654490
SAGE	Hs.654490
GO	transcription factor activity [Amigo]  transcription factor activity
GO	steroid hormone receptor activity [Amigo]  steroid hormone receptor activity
GO	retinoic acid receptor activity [Amigo]  retinoic acid receptor activity
GO	retinoic acid receptor activity [Amigo]  retinoic acid receptor activity
GO	retinoic acid receptor activity [Amigo]  retinoic acid receptor activity
GO	receptor activity [Amigo]  receptor activity
GO	cellular_component [Amigo]  cellular_component
GO	nucleus [Amigo]  nucleus
GO	nucleus [Amigo]  nucleus
GO	cytoplasm [Amigo]  cytoplasm
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	signal transduction [Amigo]  signal transduction
GO	zinc ion binding [Amigo]  zinc ion binding
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GO	metal ion binding [Amigo]  metal ion binding
BIOCARTA	Nuclear Receptors in Lipid Metabolism and Toxicity    [Genes]
PubGene	RARB
TreeFam	RARB
CTD	5915 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	RARB Related clones (RZPD - Berlin)
	PubMed
PubMed	91 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu Nov 27 14:07:55 2008