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RASA4B (RAS p21 protein activator 4B)

Identity

Other alias-
HGNC (Hugo) RASA4B
LocusID (NCBI) 100271927
Atlas_Id 72493
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 102483139 and ends at 102517777 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RASA4B   35202
Cards
Entrez_Gene (NCBI)RASA4B  100271927  RAS p21 protein activator 4B
Aliases
GeneCards (Weizmann)RASA4B
Ensembl hg19 (Hinxton)ENSG00000170667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170667 [Gene_View]  chr7:102483139-102517777 [Contig_View]  RASA4B [Vega]
ICGC DataPortalENSG00000170667
TCGA cBioPortalRASA4B
AceView (NCBI)RASA4B
Genatlas (Paris)RASA4B
WikiGenes100271927
SOURCE (Princeton)RASA4B
Genetics Home Reference (NIH)RASA4B
Genomic and cartography
GoldenPath hg38 (UCSC)RASA4B  -     chr7:102483139-102517777 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RASA4B  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblRASA4B - 7q22.1 [CytoView hg19]  RASA4B - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIRASA4B [Mapview hg19]  RASA4B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301666
RefSeq transcript (Entrez)NM_001277335
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RASA4B
Cluster EST : UnigeneHs.530089 [ NCBI ]
CGAP (NCI)Hs.530089
Alternative Splicing GalleryENSG00000170667
Gene ExpressionRASA4B [ NCBI-GEO ]   RASA4B [ EBI - ARRAY_EXPRESS ]   RASA4B [ SEEK ]   RASA4B [ MEM ]
Gene Expression Viewer (FireBrowse)RASA4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100271927
GTEX Portal (Tissue expression)RASA4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J798   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J798  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J798
Splice isoforms : SwissVarC9J798
PhosPhoSitePlusC9J798
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    PH_DOMAIN (PS50003)    RAS_GTPASE_ACTIV_1 (PS00509)    RAS_GTPASE_ACTIV_2 (PS50018)    ZF_BTK (PS51113)   
Domains : Interpro (EBI)C2_dom    PH_dom-like    PH_domain    RasGAP_CS    RasGAP_dom    Rho_GTPase_activation_prot    Znf_Btk_motif   
Domain families : Pfam (Sanger)BTK (PF00779)    C2 (PF00168)    PH (PF00169)    RasGAP (PF00616)   
Domain families : Pfam (NCBI)pfam00779    pfam00168    pfam00169    pfam00616   
Domain families : Smart (EMBL)BTK (SM00107)  C2 (SM00239)  PH (SM00233)  RasGAP (SM00323)  
Conserved Domain (NCBI)RASA4B
DMDM Disease mutations100271927
Blocks (Seattle)RASA4B
SuperfamilyC9J798
Human Protein AtlasENSG00000170667
Peptide AtlasC9J798
IPIIPI00472386   IPI01013300   IPI00893480   IPI00981407   IPI00947297   IPI00946443   IPI01014976   
Protein Interaction databases
DIP (DOE-UCLA)C9J798
IntAct (EBI)C9J798
FunCoupENSG00000170667
BioGRIDRASA4B
STRING (EMBL)RASA4B
ZODIACRASA4B
Ontologies - Pathways
QuickGOC9J798
Ontology : AmiGOGTPase activator activity  cytoplasm  cytosol  intrinsic component of the cytoplasmic side of the plasma membrane  intracellular signal transduction  positive regulation of GTPase activity  negative regulation of Ras protein signal transduction  metal ion binding  
Ontology : EGO-EBIGTPase activator activity  cytoplasm  cytosol  intrinsic component of the cytoplasmic side of the plasma membrane  intracellular signal transduction  positive regulation of GTPase activity  negative regulation of Ras protein signal transduction  metal ion binding  
Pathways : KEGGRas signaling pathway   
NDEx NetworkRASA4B
Atlas of Cancer Signalling NetworkRASA4B
Wikipedia pathwaysRASA4B
Orthology - Evolution
OrthoDB100271927
GeneTree (enSembl)ENSG00000170667
Phylogenetic Trees/Animal Genes : TreeFamRASA4B
HOVERGENC9J798
HOGENOMC9J798
Homologs : HomoloGeneRASA4B
Homology/Alignments : Family Browser (UCSC)RASA4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRASA4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RASA4B
dbVarRASA4B
ClinVarRASA4B
1000_GenomesRASA4B 
Exome Variant ServerRASA4B
ExAC (Exome Aggregation Consortium)RASA4B (select the gene name)
Genetic variants : HAPMAP100271927
Genomic Variants (DGV)RASA4B [DGVbeta]
DECIPHERRASA4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRASA4B 
Mutations
ICGC Data PortalRASA4B 
TCGA Data PortalRASA4B 
Broad Tumor PortalRASA4B
OASIS PortalRASA4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRASA4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRASA4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RASA4B
DgiDB (Drug Gene Interaction Database)RASA4B
DoCM (Curated mutations)RASA4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RASA4B (select a term)
intoGenRASA4B
Cancer3DRASA4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRASA4B
Genetic Testing Registry RASA4B
NextProtC9J798 [Medical]
TSGene100271927
GENETestsRASA4B
Huge Navigator RASA4B [HugePedia]
snp3D : Map Gene to Disease100271927
BioCentury BCIQRASA4B
ClinGenRASA4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100271927
Chemical/Pharm GKB GenePA164725296
Clinical trialRASA4B
Miscellaneous
canSAR (ICR)RASA4B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRASA4B
EVEXRASA4B
GoPubMedRASA4B
iHOPRASA4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:50:30 CEST 2017

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