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RASD1 (ras related dexamethasone induced 1)

Identity

Alias (NCBI)AGS1
DEXRAS1
MGC:26290
HGNC (Hugo) RASD1
HGNC Alias symbDEXRAS1
AGS1
HGNC Alias nameras-related protein
 dexamethasone-induced ras-related protein 1
 activator of G protein signaling
HGNC Previous nameRAS, dexamethasone-induced 1
LocusID (NCBI) 51655
Atlas_Id 42055
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 17494439 and ends at 17496395 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RASD1 (17p11.2) / VPS4A (16q22.1)RASD1 17p11.2 / VPS4A 16q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(16;17)(q22;p11) RASD1/VPS4A


External links

Nomenclature
HGNC (Hugo)RASD1   15828
Cards
Entrez_Gene (NCBI)RASD1  51655  ras related dexamethasone induced 1
AliasesAGS1; DEXRAS1; MGC:26290
GeneCards (Weizmann)RASD1
Ensembl hg19 (Hinxton)ENSG00000108551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108551 [Gene_View]  ENSG00000108551 [Sequence]  chr17:17494439-17496395 [Contig_View]  RASD1 [Vega]
ICGC DataPortalENSG00000108551
TCGA cBioPortalRASD1
AceView (NCBI)RASD1
Genatlas (Paris)RASD1
WikiGenes51655
SOURCE (Princeton)RASD1
Genetics Home Reference (NIH)RASD1
Genomic and cartography
GoldenPath hg38 (UCSC)RASD1  -     chr17:17494439-17496395 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RASD1  -     17p11.2   [Description]    (hg19-Feb_2009)
GoldenPathRASD1 - 17p11.2 [CytoView hg19]  RASD1 - 17p11.2 [CytoView hg38]
ImmunoBaseENSG00000108551
genome Data Viewer NCBIRASD1 [Mapview hg19]  
OMIM605550   
Gene and transcription
Genbank (Entrez)AF069506 AF153192 AF172846 AF177335 AF498923
RefSeq transcript (Entrez)NM_001199989 NM_016084
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RASD1
Alternative Splicing GalleryENSG00000108551
Gene ExpressionRASD1 [ NCBI-GEO ]   RASD1 [ EBI - ARRAY_EXPRESS ]   RASD1 [ SEEK ]   RASD1 [ MEM ]
Gene Expression Viewer (FireBrowse)RASD1 [ Firebrowse - Broad ]
GenevisibleExpression of RASD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51655
GTEX Portal (Tissue expression)RASD1
Human Protein AtlasENSG00000108551-RASD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y272   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y272  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y272
Splice isoforms : SwissVarQ9Y272
PhosPhoSitePlusQ9Y272
Domaine pattern : Prosite (Expaxy)RAS (PS51421)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Ras-type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RASD1
DMDM Disease mutations51655
Blocks (Seattle)RASD1
SuperfamilyQ9Y272
Human Protein Atlas [tissue]ENSG00000108551-RASD1 [tissue]
Peptide AtlasQ9Y272
HPRD08958
IPIIPI00007111   IPI00910104   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y272
IntAct (EBI)Q9Y272
FunCoupENSG00000108551
BioGRIDRASD1
STRING (EMBL)RASD1
ZODIACRASD1
Ontologies - Pathways
QuickGOQ9Y272
Ontology : AmiGOGTPase activity  protein binding  GTP binding  nucleus  plasma membrane  signal transduction  G protein-coupled receptor signaling pathway  nitric oxide mediated signal transduction  sarcoplasmic reticulum  negative regulation of transcription, DNA-templated  perinuclear region of cytoplasm  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  nucleus  plasma membrane  signal transduction  G protein-coupled receptor signaling pathway  nitric oxide mediated signal transduction  sarcoplasmic reticulum  negative regulation of transcription, DNA-templated  perinuclear region of cytoplasm  
Pathways : KEGGCircadian entrainment   
NDEx NetworkRASD1
Atlas of Cancer Signalling NetworkRASD1
Wikipedia pathwaysRASD1
Orthology - Evolution
OrthoDB51655
GeneTree (enSembl)ENSG00000108551
Phylogenetic Trees/Animal Genes : TreeFamRASD1
HOGENOMQ9Y272
Homologs : HomoloGeneRASD1
Homology/Alignments : Family Browser (UCSC)RASD1
Gene fusions - Rearrangements
Fusion : MitelmanRASD1/VPS4A [17p11.2/16q22.1]  
Fusion PortalRASD1 17p11.2 VPS4A 16q22.1 PRAD
Fusion : QuiverRASD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRASD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RASD1
dbVarRASD1
ClinVarRASD1
MonarchRASD1
1000_GenomesRASD1 
Exome Variant ServerRASD1
GNOMAD BrowserENSG00000108551
Varsome BrowserRASD1
Genetic variants : HAPMAP51655
Genomic Variants (DGV)RASD1 [DGVbeta]
DECIPHERRASD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRASD1 
Mutations
ICGC Data PortalRASD1 
TCGA Data PortalRASD1 
Broad Tumor PortalRASD1
OASIS PortalRASD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRASD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRASD1
Mutations and Diseases : HGMDRASD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RASD1
DgiDB (Drug Gene Interaction Database)RASD1
DoCM (Curated mutations)RASD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RASD1 (select a term)
intoGenRASD1
Cancer3DRASD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605550   
Orphanet
DisGeNETRASD1
MedgenRASD1
Genetic Testing Registry RASD1
NextProtQ9Y272 [Medical]
TSGene51655
GENETestsRASD1
Target ValidationRASD1
Huge Navigator RASD1 [HugePedia]
snp3D : Map Gene to Disease51655
BioCentury BCIQRASD1
ClinGenRASD1
Clinical trials, drugs, therapy
Protein Interactions : CTD51655
Pharm GKB GenePA34236
Clinical trialRASD1
Miscellaneous
canSAR (ICR)RASD1 (select the gene name)
HarmonizomeRASD1
DataMed IndexRASD1
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRASD1
EVEXRASD1
GoPubMedRASD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:29:40 CEST 2020

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