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RASGEF1A (RasGEF domain family member 1A)

Identity

Alias_symbol (synonym)CG4853
FLJ37817
Other alias
HGNC (Hugo) RASGEF1A
LocusID (NCBI) 221002
Atlas_Id 43450
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43194533 and ends at 43229739 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RASGEF1A   24246
Cards
Entrez_Gene (NCBI)RASGEF1A  221002  RasGEF domain family member 1A
AliasesCG4853
GeneCards (Weizmann)RASGEF1A
Ensembl hg19 (Hinxton)ENSG00000198915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198915 [Gene_View]  chr10:43194533-43229739 [Contig_View]  RASGEF1A [Vega]
ICGC DataPortalENSG00000198915
TCGA cBioPortalRASGEF1A
AceView (NCBI)RASGEF1A
Genatlas (Paris)RASGEF1A
WikiGenes221002
SOURCE (Princeton)RASGEF1A
Genetics Home Reference (NIH)RASGEF1A
Genomic and cartography
GoldenPath hg38 (UCSC)RASGEF1A  -     chr10:43194533-43229739 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RASGEF1A  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblRASGEF1A - 10q11.21 [CytoView hg19]  RASGEF1A - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIRASGEF1A [Mapview hg19]  RASGEF1A [Mapview hg38]
OMIM614531   
Gene and transcription
Genbank (Entrez)AI862588 AK095136 AK127432 BC022548 HY118234
RefSeq transcript (Entrez)NM_001282862 NM_145313
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RASGEF1A
Cluster EST : UnigeneHs.125293 [ NCBI ]
CGAP (NCI)Hs.125293
Alternative Splicing GalleryENSG00000198915
Gene ExpressionRASGEF1A [ NCBI-GEO ]   RASGEF1A [ EBI - ARRAY_EXPRESS ]   RASGEF1A [ SEEK ]   RASGEF1A [ MEM ]
Gene Expression Viewer (FireBrowse)RASGEF1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221002
GTEX Portal (Tissue expression)RASGEF1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9B8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9B8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9B8
Splice isoforms : SwissVarQ8N9B8
PhosPhoSitePlusQ8N9B8
Domaine pattern : Prosite (Expaxy)RASGEF_CAT (PS50009)    RASGEF_NTER (PS50212)   
Domains : Interpro (EBI)Ras-like_Gua-exchang_fac_N    Ras_GEF_dom    RASGEF_cat_dom   
Domain families : Pfam (Sanger)RasGEF (PF00617)    RasGEF_N (PF00618)   
Domain families : Pfam (NCBI)pfam00617    pfam00618   
Domain families : Smart (EMBL)RasGEF (SM00147)  RasGEFN (SM00229)  
Conserved Domain (NCBI)RASGEF1A
DMDM Disease mutations221002
Blocks (Seattle)RASGEF1A
SuperfamilyQ8N9B8
Human Protein AtlasENSG00000198915
Peptide AtlasQ8N9B8
HPRD15211
IPIIPI00396081   IPI00182545   IPI00853000   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9B8
IntAct (EBI)Q8N9B8
FunCoupENSG00000198915
BioGRIDRASGEF1A
STRING (EMBL)RASGEF1A
ZODIACRASGEF1A
Ontologies - Pathways
QuickGOQ8N9B8
Ontology : AmiGOMAPK cascade  Ras guanyl-nucleotide exchange factor activity  Ras guanyl-nucleotide exchange factor activity  cytosol  small GTPase mediated signal transduction  cell migration  positive regulation of GTPase activity  positive regulation of Ras protein signal transduction  
Ontology : EGO-EBIMAPK cascade  Ras guanyl-nucleotide exchange factor activity  Ras guanyl-nucleotide exchange factor activity  cytosol  small GTPase mediated signal transduction  cell migration  positive regulation of GTPase activity  positive regulation of Ras protein signal transduction  
NDEx NetworkRASGEF1A
Atlas of Cancer Signalling NetworkRASGEF1A
Wikipedia pathwaysRASGEF1A
Orthology - Evolution
OrthoDB221002
GeneTree (enSembl)ENSG00000198915
Phylogenetic Trees/Animal Genes : TreeFamRASGEF1A
HOVERGENQ8N9B8
HOGENOMQ8N9B8
Homologs : HomoloGeneRASGEF1A
Homology/Alignments : Family Browser (UCSC)RASGEF1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRASGEF1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RASGEF1A
dbVarRASGEF1A
ClinVarRASGEF1A
1000_GenomesRASGEF1A 
Exome Variant ServerRASGEF1A
ExAC (Exome Aggregation Consortium)RASGEF1A (select the gene name)
Genetic variants : HAPMAP221002
Genomic Variants (DGV)RASGEF1A [DGVbeta]
DECIPHERRASGEF1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRASGEF1A 
Mutations
ICGC Data PortalRASGEF1A 
TCGA Data PortalRASGEF1A 
Broad Tumor PortalRASGEF1A
OASIS PortalRASGEF1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRASGEF1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRASGEF1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RASGEF1A
DgiDB (Drug Gene Interaction Database)RASGEF1A
DoCM (Curated mutations)RASGEF1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RASGEF1A (select a term)
intoGenRASGEF1A
Cancer3DRASGEF1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614531   
Orphanet
MedgenRASGEF1A
Genetic Testing Registry RASGEF1A
NextProtQ8N9B8 [Medical]
TSGene221002
GENETestsRASGEF1A
Huge Navigator RASGEF1A [HugePedia]
snp3D : Map Gene to Disease221002
BioCentury BCIQRASGEF1A
ClinGenRASGEF1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221002
Chemical/Pharm GKB GenePA134884893
Clinical trialRASGEF1A
Miscellaneous
canSAR (ICR)RASGEF1A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRASGEF1A
EVEXRASGEF1A
GoPubMedRASGEF1A
iHOPRASGEF1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:34:20 CEST 2017

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