Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RASIP1 (Ras interacting protein 1)

Identity

Alias_symbol (synonym)FLJ20401
RAIN
Other alias
HGNC (Hugo) RASIP1
LocusID (NCBI) 54922
Atlas_Id 43458
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48720585 and ends at 48740713 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KAT5 (11q13.1) / RASIP1 (19q13.33)RPL27 (17q21.31) / RASIP1 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RASIP1   24716
Cards
Entrez_Gene (NCBI)RASIP1  54922  Ras interacting protein 1
AliasesRAIN
GeneCards (Weizmann)RASIP1
Ensembl hg19 (Hinxton)ENSG00000105538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105538 [Gene_View]  chr19:48720585-48740713 [Contig_View]  RASIP1 [Vega]
ICGC DataPortalENSG00000105538
TCGA cBioPortalRASIP1
AceView (NCBI)RASIP1
Genatlas (Paris)RASIP1
WikiGenes54922
SOURCE (Princeton)RASIP1
Genetics Home Reference (NIH)RASIP1
Genomic and cartography
GoldenPath hg38 (UCSC)RASIP1  -     chr19:48720585-48740713 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RASIP1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblRASIP1 - 19q13.33 [CytoView hg19]  RASIP1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIRASIP1 [Mapview hg19]  RASIP1 [Mapview hg38]
OMIM609623   
Gene and transcription
Genbank (Entrez)AK000408 AK123179 AY378097 BC021860 BC028614
RefSeq transcript (Entrez)NM_017805
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RASIP1
Cluster EST : UnigeneHs.233955 [ NCBI ]
CGAP (NCI)Hs.233955
Alternative Splicing GalleryENSG00000105538
Gene ExpressionRASIP1 [ NCBI-GEO ]   RASIP1 [ EBI - ARRAY_EXPRESS ]   RASIP1 [ SEEK ]   RASIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RASIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54922
GTEX Portal (Tissue expression)RASIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U651   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U651  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U651
Splice isoforms : SwissVarQ5U651
PhosPhoSitePlusQ5U651
Domaine pattern : Prosite (Expaxy)DILUTE (PS51126)    RA (PS50200)   
Domains : Interpro (EBI)Dilute_dom    FHA_dom    RA_dom    SMAD_FHA_domain    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)DIL (PF01843)    RA (PF00788)   
Domain families : Pfam (NCBI)pfam01843    pfam00788   
Domain families : Smart (EMBL)DIL (SM01132)  RA (SM00314)  
Conserved Domain (NCBI)RASIP1
DMDM Disease mutations54922
Blocks (Seattle)RASIP1
PDB (SRS)5KHO    5KHQ   
PDB (PDBSum)5KHO    5KHQ   
PDB (IMB)5KHO    5KHQ   
PDB (RSDB)5KHO    5KHQ   
Structural Biology KnowledgeBase5KHO    5KHQ   
SCOP (Structural Classification of Proteins)5KHO    5KHQ   
CATH (Classification of proteins structures)5KHO    5KHQ   
SuperfamilyQ5U651
Human Protein AtlasENSG00000105538
Peptide AtlasQ5U651
HPRD15214
IPIIPI00015805   
Protein Interaction databases
DIP (DOE-UCLA)Q5U651
IntAct (EBI)Q5U651
FunCoupENSG00000105538
BioGRIDRASIP1
STRING (EMBL)RASIP1
ZODIACRASIP1
Ontologies - Pathways
QuickGOQ5U651
Ontology : AmiGOangiogenesis  vasculogenesis  Golgi stack  signal transduction  negative regulation of autophagy  regulation of GTPase activity  perinuclear region of cytoplasm  branching morphogenesis of an epithelial tube  
Ontology : EGO-EBIangiogenesis  vasculogenesis  Golgi stack  signal transduction  negative regulation of autophagy  regulation of GTPase activity  perinuclear region of cytoplasm  branching morphogenesis of an epithelial tube  
NDEx NetworkRASIP1
Atlas of Cancer Signalling NetworkRASIP1
Wikipedia pathwaysRASIP1
Orthology - Evolution
OrthoDB54922
GeneTree (enSembl)ENSG00000105538
Phylogenetic Trees/Animal Genes : TreeFamRASIP1
HOVERGENQ5U651
HOGENOMQ5U651
Homologs : HomoloGeneRASIP1
Homology/Alignments : Family Browser (UCSC)RASIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRASIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RASIP1
dbVarRASIP1
ClinVarRASIP1
1000_GenomesRASIP1 
Exome Variant ServerRASIP1
ExAC (Exome Aggregation Consortium)RASIP1 (select the gene name)
Genetic variants : HAPMAP54922
Genomic Variants (DGV)RASIP1 [DGVbeta]
DECIPHERRASIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRASIP1 
Mutations
ICGC Data PortalRASIP1 
TCGA Data PortalRASIP1 
Broad Tumor PortalRASIP1
OASIS PortalRASIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRASIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRASIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RASIP1
DgiDB (Drug Gene Interaction Database)RASIP1
DoCM (Curated mutations)RASIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RASIP1 (select a term)
intoGenRASIP1
Cancer3DRASIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609623   
Orphanet
MedgenRASIP1
Genetic Testing Registry RASIP1
NextProtQ5U651 [Medical]
TSGene54922
GENETestsRASIP1
Target ValidationRASIP1
Huge Navigator RASIP1 [HugePedia]
snp3D : Map Gene to Disease54922
BioCentury BCIQRASIP1
ClinGenRASIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54922
Chemical/Pharm GKB GenePA134875519
Clinical trialRASIP1
Miscellaneous
canSAR (ICR)RASIP1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRASIP1
EVEXRASIP1
GoPubMedRASIP1
iHOPRASIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:28:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.