Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RASSF7 (Ras association domain family member 7)

Identity

Alias (NCBI)C11orf13
CFAP88
FAP88
HRAS1
HRC1
HGNC (Hugo) RASSF7
HGNC Alias symbHRC1
HRAS1
HGNC Previous nameC11orf13
HGNC Previous namechromosome 11 open reading frame 13
 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
LocusID (NCBI) 8045
Atlas_Id 862
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 560970 and ends at 564025 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RASSF7 (11p15.5) / GPRC5A (12p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RASSF7   1166
Cards
Entrez_Gene (NCBI)RASSF7  8045  Ras association domain family member 7
AliasesC11orf13; CFAP88; FAP88; HRAS1; 
HRC1
GeneCards (Weizmann)RASSF7
Ensembl hg19 (Hinxton)ENSG00000099849 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099849 [Gene_View]  ENSG00000099849 [Sequence]  chr11:560970-564025 [Contig_View]  RASSF7 [Vega]
ICGC DataPortalENSG00000099849
TCGA cBioPortalRASSF7
AceView (NCBI)RASSF7
Genatlas (Paris)RASSF7
WikiGenes8045
SOURCE (Princeton)RASSF7
Genetics Home Reference (NIH)RASSF7
Genomic and cartography
GoldenPath hg38 (UCSC)RASSF7  -     chr11:560970-564025 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RASSF7  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathRASSF7 - 11p15.5 [CytoView hg19]  RASSF7 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000099849
genome Data Viewer NCBIRASSF7 [Mapview hg19]  
OMIM143023   
Gene and transcription
Genbank (Entrez)AL535761 BC106921 BC106922 CA315057 M91083
RefSeq transcript (Entrez)NM_001143993 NM_001143994 NM_003475
RefSeq genomic (Entrez)NC_000011 NT_187586
Consensus coding sequences : CCDS (NCBI)RASSF7
Alternative Splicing GalleryENSG00000099849
Gene ExpressionRASSF7 [ NCBI-GEO ]   RASSF7 [ EBI - ARRAY_EXPRESS ]   RASSF7 [ SEEK ]   RASSF7 [ MEM ]
Gene Expression Viewer (FireBrowse)RASSF7 [ Firebrowse - Broad ]
GenevisibleExpression of RASSF7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8045
GTEX Portal (Tissue expression)RASSF7
Human Protein AtlasENSG00000099849-RASSF7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02833   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02833  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02833
Splice isoforms : SwissVarQ02833
PhosPhoSitePlusQ02833
Domaine pattern : Prosite (Expaxy)RA (PS50200)   
Domains : Interpro (EBI)N-RASSF    RA_dom    RASSF7    Ubiquitin-like_domsf   
Domain families : Pfam (Sanger)RA (PF00788)   
Domain families : Pfam (NCBI)pfam00788   
Domain families : Smart (EMBL)RA (SM00314)  
Conserved Domain (NCBI)RASSF7
DMDM Disease mutations8045
Blocks (Seattle)RASSF7
SuperfamilyQ02833
Human Protein Atlas [tissue]ENSG00000099849-RASSF7 [tissue]
Peptide AtlasQ02833
HPRD00878
IPIIPI00020179   IPI00218950   IPI00974271   IPI00921131   IPI00984707   IPI00985215   
Protein Interaction databases
DIP (DOE-UCLA)Q02833
IntAct (EBI)Q02833
FunCoupENSG00000099849
BioGRIDRASSF7
STRING (EMBL)RASSF7
ZODIACRASSF7
Ontologies - Pathways
QuickGOQ02833
Ontology : AmiGOprotein binding  cytoplasm  apoptotic process  signal transduction  centriolar satellite  regulation of microtubule cytoskeleton organization  
Ontology : EGO-EBIprotein binding  cytoplasm  apoptotic process  signal transduction  centriolar satellite  regulation of microtubule cytoskeleton organization  
NDEx NetworkRASSF7
Atlas of Cancer Signalling NetworkRASSF7
Wikipedia pathwaysRASSF7
Orthology - Evolution
OrthoDB8045
GeneTree (enSembl)ENSG00000099849
Phylogenetic Trees/Animal Genes : TreeFamRASSF7
HOGENOMQ02833
Homologs : HomoloGeneRASSF7
Homology/Alignments : Family Browser (UCSC)RASSF7
Gene fusions - Rearrangements
Fusion : QuiverRASSF7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRASSF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RASSF7
dbVarRASSF7
ClinVarRASSF7
MonarchRASSF7
1000_GenomesRASSF7 
Exome Variant ServerRASSF7
GNOMAD BrowserENSG00000099849
Varsome BrowserRASSF7
Genetic variants : HAPMAP8045
Genomic Variants (DGV)RASSF7 [DGVbeta]
DECIPHERRASSF7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRASSF7 
Mutations
ICGC Data PortalRASSF7 
TCGA Data PortalRASSF7 
Broad Tumor PortalRASSF7
OASIS PortalRASSF7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRASSF7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRASSF7
Mutations and Diseases : HGMDRASSF7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RASSF7
DgiDB (Drug Gene Interaction Database)RASSF7
DoCM (Curated mutations)RASSF7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RASSF7 (select a term)
intoGenRASSF7
Cancer3DRASSF7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM143023   
Orphanet
DisGeNETRASSF7
MedgenRASSF7
Genetic Testing Registry RASSF7
NextProtQ02833 [Medical]
TSGene8045
GENETestsRASSF7
Target ValidationRASSF7
Huge Navigator RASSF7 [HugePedia]
snp3D : Map Gene to Disease8045
BioCentury BCIQRASSF7
ClinGenRASSF7
Clinical trials, drugs, therapy
Protein Interactions : CTD8045
Pharm GKB GenePA25480
Clinical trialRASSF7
Miscellaneous
canSAR (ICR)RASSF7 (select the gene name)
HarmonizomeRASSF7
DataMed IndexRASSF7
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRASSF7
EVEXRASSF7
GoPubMedRASSF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:29:44 CEST 2020
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