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RASSF8 (Ras association domain family member 8)

Identity

Alias_namesC12orf2
chromosome 12 open reading frame 2
Ras association (RalGDS/AF-6) domain family (N-terminal) member 8
Alias_symbol (synonym)HoJ-1
Other aliasHOJ1
HGNC (Hugo) RASSF8
LocusID (NCBI) 11228
Atlas_Id 43852
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 26052558 and ends at 26072874 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNOT1 (16q21) / RASSF8 (12p12.1)IL20RB (3q22.3) / RASSF8 (12p12.1)RASSF8 (12p12.1) / RASSF8 (12p12.1)
RASSF8 (12p12.1) / RERGL (12p12.3)RASSF8 (12p12.1) / SLC47A2 (17p11.2)CNOT1 16q21 / RASSF8 12p12.1
RASSF8 12p12.1 / RERGL 12p12.3RASSF8 12p12.1 / SLC47A2 17p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RASSF8   13232
Cards
Entrez_Gene (NCBI)RASSF8  11228  Ras association domain family member 8
AliasesC12orf2; HOJ1
GeneCards (Weizmann)RASSF8
Ensembl hg19 (Hinxton)ENSG00000123094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123094 [Gene_View]  chr12:26052558-26072874 [Contig_View]  RASSF8 [Vega]
ICGC DataPortalENSG00000123094
TCGA cBioPortalRASSF8
AceView (NCBI)RASSF8
Genatlas (Paris)RASSF8
WikiGenes11228
SOURCE (Princeton)RASSF8
Genetics Home Reference (NIH)RASSF8
Genomic and cartography
GoldenPath hg38 (UCSC)RASSF8  -     chr12:26052558-26072874 +  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RASSF8  -     12p12.1   [Description]    (hg19-Feb_2009)
EnsemblRASSF8 - 12p12.1 [CytoView hg19]  RASSF8 - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBIRASSF8 [Mapview hg19]  RASSF8 [Mapview hg38]
OMIM608231   
Gene and transcription
Genbank (Entrez)AB093206 AK021604 AK290055 AK292333 AL122049
RefSeq transcript (Entrez)NM_001164746 NM_001164747 NM_001164748 NM_007211
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RASSF8
Cluster EST : UnigeneHs.696433 [ NCBI ]
CGAP (NCI)Hs.696433
Alternative Splicing GalleryENSG00000123094
Gene ExpressionRASSF8 [ NCBI-GEO ]   RASSF8 [ EBI - ARRAY_EXPRESS ]   RASSF8 [ SEEK ]   RASSF8 [ MEM ]
Gene Expression Viewer (FireBrowse)RASSF8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11228
GTEX Portal (Tissue expression)RASSF8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHQ8
Splice isoforms : SwissVarQ8NHQ8
PhosPhoSitePlusQ8NHQ8
Domaine pattern : Prosite (Expaxy)RA (PS50200)   
Domains : Interpro (EBI)N-RASSF    RA_dom    RASSF8    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)RA (PF00788)   
Domain families : Pfam (NCBI)pfam00788   
Domain families : Smart (EMBL)RA (SM00314)  
Conserved Domain (NCBI)RASSF8
DMDM Disease mutations11228
Blocks (Seattle)RASSF8
PDB (SRS)2CS4   
PDB (PDBSum)2CS4   
PDB (IMB)2CS4   
PDB (RSDB)2CS4   
Structural Biology KnowledgeBase2CS4   
SCOP (Structural Classification of Proteins)2CS4   
CATH (Classification of proteins structures)2CS4   
SuperfamilyQ8NHQ8
Human Protein AtlasENSG00000123094
Peptide AtlasQ8NHQ8
HPRD07084
IPIIPI00169294   IPI00607715   IPI01014206   IPI01014695   IPI01014234   IPI01013022   IPI00790989   IPI01011827   IPI00794869   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHQ8
IntAct (EBI)Q8NHQ8
FunCoupENSG00000123094
BioGRIDRASSF8
STRING (EMBL)RASSF8
ZODIACRASSF8
Ontologies - Pathways
QuickGOQ8NHQ8
Ontology : AmiGOsignal transduction  adherens junction maintenance  
Ontology : EGO-EBIsignal transduction  adherens junction maintenance  
NDEx NetworkRASSF8
Atlas of Cancer Signalling NetworkRASSF8
Wikipedia pathwaysRASSF8
Orthology - Evolution
OrthoDB11228
GeneTree (enSembl)ENSG00000123094
Phylogenetic Trees/Animal Genes : TreeFamRASSF8
HOVERGENQ8NHQ8
HOGENOMQ8NHQ8
Homologs : HomoloGeneRASSF8
Homology/Alignments : Family Browser (UCSC)RASSF8
Gene fusions - Rearrangements
Fusion : MitelmanCNOT1/RASSF8 [16q21/12p12.1]  [t(12;16)(p12;q21)]  
Fusion : MitelmanIL20RB/RASSF8 [3q22.3/12p12.1]  [t(3;12)(q22;p12)]  
Fusion : MitelmanRASSF8/RERGL [12p12.1/12p12.3]  [t(12;12)(p12;p12)]  
Fusion : MitelmanRASSF8/SLC47A2 [12p12.1/17p11.2]  [t(12;17)(p12;p11)]  
Fusion: TCGACNOT1 16q21 RASSF8 12p12.1 BRCA
Fusion: TCGARASSF8 12p12.1 RERGL 12p12.3 BRCA
Fusion: TCGARASSF8 12p12.1 SLC47A2 17p11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRASSF8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RASSF8
dbVarRASSF8
ClinVarRASSF8
1000_GenomesRASSF8 
Exome Variant ServerRASSF8
ExAC (Exome Aggregation Consortium)RASSF8 (select the gene name)
Genetic variants : HAPMAP11228
Genomic Variants (DGV)RASSF8 [DGVbeta]
DECIPHERRASSF8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRASSF8 
Mutations
ICGC Data PortalRASSF8 
TCGA Data PortalRASSF8 
Broad Tumor PortalRASSF8
OASIS PortalRASSF8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRASSF8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRASSF8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RASSF8
DgiDB (Drug Gene Interaction Database)RASSF8
DoCM (Curated mutations)RASSF8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RASSF8 (select a term)
intoGenRASSF8
Cancer3DRASSF8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608231   
Orphanet
MedgenRASSF8
Genetic Testing Registry RASSF8
NextProtQ8NHQ8 [Medical]
TSGene11228
GENETestsRASSF8
Huge Navigator RASSF8 [HugePedia]
snp3D : Map Gene to Disease11228
BioCentury BCIQRASSF8
ClinGenRASSF8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11228
Chemical/Pharm GKB GenePA25502
Clinical trialRASSF8
Miscellaneous
canSAR (ICR)RASSF8 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRASSF8
EVEXRASSF8
GoPubMedRASSF8
iHOPRASSF8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:34:24 CEST 2017

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