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RASSF9 (Ras association domain family member 9)

Identity

Alias_namesPAMCI
peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor
Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
Alias_symbol (synonym)P-CIP1
Other aliasPCIP1
HGNC (Hugo) RASSF9
LocusID (NCBI) 9182
Atlas_Id 72500
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 85804553 and ends at 85836540 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RASSF9   15739
Cards
Entrez_Gene (NCBI)RASSF9  9182  Ras association domain family member 9
AliasesP-CIP1; PAMCI; PCIP1
GeneCards (Weizmann)RASSF9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:85804553-85836540 [Contig_View]  RASSF9 [Vega]
TCGA cBioPortalRASSF9
AceView (NCBI)RASSF9
Genatlas (Paris)RASSF9
WikiGenes9182
SOURCE (Princeton)RASSF9
Genetics Home Reference (NIH)RASSF9
Genomic and cartography
GoldenPath hg38 (UCSC)RASSF9  -     chr12:85804553-85836540 -  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RASSF9  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblRASSF9 - 12q21.31 [CytoView hg19]  RASSF9 - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBIRASSF9 [Mapview hg19]  RASSF9 [Mapview hg38]
OMIM610383   
Gene and transcription
Genbank (Entrez)AF056209 AK022089 BC031589 DQ890787 DQ893943
RefSeq transcript (Entrez)NM_005447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RASSF9
Cluster EST : UnigeneHs.527881 [ NCBI ]
CGAP (NCI)Hs.527881
Gene ExpressionRASSF9 [ NCBI-GEO ]   RASSF9 [ EBI - ARRAY_EXPRESS ]   RASSF9 [ SEEK ]   RASSF9 [ MEM ]
Gene Expression Viewer (FireBrowse)RASSF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9182
GTEX Portal (Tissue expression)RASSF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75901   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75901  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75901
Splice isoforms : SwissVarO75901
PhosPhoSitePlusO75901
Domaine pattern : Prosite (Expaxy)RA (PS50200)   
Domains : Interpro (EBI)N-RASSF    RA_dom    RASSF9    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RA (SM00314)  
Conserved Domain (NCBI)RASSF9
DMDM Disease mutations9182
Blocks (Seattle)RASSF9
SuperfamilyO75901
Peptide AtlasO75901
HPRD08826
IPIIPI00023105   
Protein Interaction databases
DIP (DOE-UCLA)O75901
IntAct (EBI)O75901
BioGRIDRASSF9
STRING (EMBL)RASSF9
ZODIACRASSF9
Ontologies - Pathways
QuickGOO75901
Ontology : AmiGOtransporter activity  protein binding  endosome  cytosol  protein targeting  signal transduction  trans-Golgi network transport vesicle membrane  endosomal transport  extracellular exosome  
Ontology : EGO-EBItransporter activity  protein binding  endosome  cytosol  protein targeting  signal transduction  trans-Golgi network transport vesicle membrane  endosomal transport  extracellular exosome  
NDEx NetworkRASSF9
Atlas of Cancer Signalling NetworkRASSF9
Wikipedia pathwaysRASSF9
Orthology - Evolution
OrthoDB9182
Phylogenetic Trees/Animal Genes : TreeFamRASSF9
HOVERGENO75901
HOGENOMO75901
Homologs : HomoloGeneRASSF9
Homology/Alignments : Family Browser (UCSC)RASSF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRASSF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RASSF9
dbVarRASSF9
ClinVarRASSF9
1000_GenomesRASSF9 
Exome Variant ServerRASSF9
ExAC (Exome Aggregation Consortium)RASSF9 (select the gene name)
Genetic variants : HAPMAP9182
Genomic Variants (DGV)RASSF9 [DGVbeta]
DECIPHERRASSF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRASSF9 
Mutations
ICGC Data PortalRASSF9 
TCGA Data PortalRASSF9 
Broad Tumor PortalRASSF9
OASIS PortalRASSF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRASSF9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRASSF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RASSF9
DgiDB (Drug Gene Interaction Database)RASSF9
DoCM (Curated mutations)RASSF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RASSF9 (select a term)
intoGenRASSF9
Cancer3DRASSF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610383   
Orphanet
MedgenRASSF9
Genetic Testing Registry RASSF9
NextProtO75901 [Medical]
TSGene9182
GENETestsRASSF9
Huge Navigator RASSF9 [HugePedia]
snp3D : Map Gene to Disease9182
BioCentury BCIQRASSF9
ClinGenRASSF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9182
Chemical/Pharm GKB GenePA162400725
Clinical trialRASSF9
Miscellaneous
canSAR (ICR)RASSF9 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRASSF9
EVEXRASSF9
GoPubMedRASSF9
iHOPRASSF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:50:31 CEST 2017

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