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RAVER1 (ribonucleoprotein, PTB binding 1)

Identity

Alias_namesribonucleoprotein, PTB-binding 1
Alias_symbol (synonym)KIAA1978
Other alias-
HGNC (Hugo) RAVER1
LocusID (NCBI) 125950
Atlas_Id 72501
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10316213 and ends at 10333638 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNMT1 (19p13.2) / RAVER1 (19p13.2)RAVER1 (19p13.2) / DOCK6 (19p13.2)RAVER1 (19p13.2) / SYNCRIP (6q14.3)
S1PR2 (19p13.2) / RAVER1 (19p13.2)S1PR2 RAVER1DNMT1 RAVER1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAVER1   30296
Cards
Entrez_Gene (NCBI)RAVER1  125950  ribonucleoprotein, PTB binding 1
Aliases
GeneCards (Weizmann)RAVER1
Ensembl hg19 (Hinxton)ENSG00000161847 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161847 [Gene_View]  chr19:10316213-10333638 [Contig_View]  RAVER1 [Vega]
ICGC DataPortalENSG00000161847
TCGA cBioPortalRAVER1
AceView (NCBI)RAVER1
Genatlas (Paris)RAVER1
WikiGenes125950
SOURCE (Princeton)RAVER1
Genetics Home Reference (NIH)RAVER1
Genomic and cartography
GoldenPath hg38 (UCSC)RAVER1  -     chr19:10316213-10333638 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAVER1  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblRAVER1 - 19p13.2 [CytoView hg19]  RAVER1 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIRAVER1 [Mapview hg19]  RAVER1 [Mapview hg38]
OMIM609950   
Gene and transcription
Genbank (Entrez)AB075858 BC037428 BC037565 BX401103 CR746909
RefSeq transcript (Entrez)NM_133452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAVER1
Cluster EST : UnigeneHs.744952 [ NCBI ]
CGAP (NCI)Hs.744952
Alternative Splicing GalleryENSG00000161847
Gene ExpressionRAVER1 [ NCBI-GEO ]   RAVER1 [ EBI - ARRAY_EXPRESS ]   RAVER1 [ SEEK ]   RAVER1 [ MEM ]
Gene Expression Viewer (FireBrowse)RAVER1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125950
GTEX Portal (Tissue expression)RAVER1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY67
Splice isoforms : SwissVarQ8IY67
PhosPhoSitePlusQ8IY67
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RAVER1
DMDM Disease mutations125950
Blocks (Seattle)RAVER1
PDB (SRS)3H2U    3H2V    3SMZ    3VF0   
PDB (PDBSum)3H2U    3H2V    3SMZ    3VF0   
PDB (IMB)3H2U    3H2V    3SMZ    3VF0   
PDB (RSDB)3H2U    3H2V    3SMZ    3VF0   
Structural Biology KnowledgeBase3H2U    3H2V    3SMZ    3VF0   
SCOP (Structural Classification of Proteins)3H2U    3H2V    3SMZ    3VF0   
CATH (Classification of proteins structures)3H2U    3H2V    3SMZ    3VF0   
SuperfamilyQ8IY67
Human Protein AtlasENSG00000161847
Peptide AtlasQ8IY67
HPRD11484
IPIIPI00217670   IPI00643760   IPI00217661   IPI00983920   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY67
IntAct (EBI)Q8IY67
FunCoupENSG00000161847
BioGRIDRAVER1
STRING (EMBL)RAVER1
ZODIACRAVER1
Ontologies - Pathways
QuickGOQ8IY67
Ontology : AmiGOmRNA splicing, via spliceosome  nucleic acid binding  RNA binding  nucleus  cytoplasm  
Ontology : EGO-EBImRNA splicing, via spliceosome  nucleic acid binding  RNA binding  nucleus  cytoplasm  
NDEx NetworkRAVER1
Atlas of Cancer Signalling NetworkRAVER1
Wikipedia pathwaysRAVER1
Orthology - Evolution
OrthoDB125950
GeneTree (enSembl)ENSG00000161847
Phylogenetic Trees/Animal Genes : TreeFamRAVER1
HOVERGENQ8IY67
HOGENOMQ8IY67
Homologs : HomoloGeneRAVER1
Homology/Alignments : Family Browser (UCSC)RAVER1
Gene fusions - Rearrangements
Fusion: TCGAS1PR2 RAVER1
Fusion: TCGADNMT1 RAVER1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAVER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAVER1
dbVarRAVER1
ClinVarRAVER1
1000_GenomesRAVER1 
Exome Variant ServerRAVER1
ExAC (Exome Aggregation Consortium)RAVER1 (select the gene name)
Genetic variants : HAPMAP125950
Genomic Variants (DGV)RAVER1 [DGVbeta]
DECIPHERRAVER1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAVER1 
Mutations
ICGC Data PortalRAVER1 
TCGA Data PortalRAVER1 
Broad Tumor PortalRAVER1
OASIS PortalRAVER1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAVER1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAVER1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAVER1
DgiDB (Drug Gene Interaction Database)RAVER1
DoCM (Curated mutations)RAVER1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAVER1 (select a term)
intoGenRAVER1
Cancer3DRAVER1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609950   
Orphanet
MedgenRAVER1
Genetic Testing Registry RAVER1
NextProtQ8IY67 [Medical]
TSGene125950
GENETestsRAVER1
Target ValidationRAVER1
Huge Navigator RAVER1 [HugePedia]
snp3D : Map Gene to Disease125950
BioCentury BCIQRAVER1
ClinGenRAVER1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125950
Chemical/Pharm GKB GenePA144596390
Clinical trialRAVER1
Miscellaneous
canSAR (ICR)RAVER1 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAVER1
EVEXRAVER1
GoPubMedRAVER1
iHOPRAVER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:52 CEST 2017

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