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RAVER2 (ribonucleoprotein, PTB binding 2)

Identity

Alias_namesribonucleoprotein, PTB-binding 2
Alias_symbol (synonym)KIAA1579
FLJ10770
Other alias-
HGNC (Hugo) RAVER2
LocusID (NCBI) 55225
Atlas_Id 72502
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 64745095 and ends at 64833231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CARHSP1 (16p13.2) / RAVER2 (1p31.3)RAVER2 (1p31.3) / CPSF3L (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAVER2   25577
Cards
Entrez_Gene (NCBI)RAVER2  55225  ribonucleoprotein, PTB binding 2
Aliases
GeneCards (Weizmann)RAVER2
Ensembl hg19 (Hinxton)ENSG00000162437 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162437 [Gene_View]  chr1:64745095-64833231 [Contig_View]  RAVER2 [Vega]
ICGC DataPortalENSG00000162437
TCGA cBioPortalRAVER2
AceView (NCBI)RAVER2
Genatlas (Paris)RAVER2
WikiGenes55225
SOURCE (Princeton)RAVER2
Genetics Home Reference (NIH)RAVER2
Genomic and cartography
GoldenPath hg38 (UCSC)RAVER2  -     chr1:64745095-64833231 +  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAVER2  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblRAVER2 - 1p31.3 [CytoView hg19]  RAVER2 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBIRAVER2 [Mapview hg19]  RAVER2 [Mapview hg38]
OMIM609953   
Gene and transcription
Genbank (Entrez)AB046799 AK001632 AK058029 AK299228 AL359613
RefSeq transcript (Entrez)NM_018211 NM_018716
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAVER2
Cluster EST : UnigeneHs.591443 [ NCBI ]
CGAP (NCI)Hs.591443
Alternative Splicing GalleryENSG00000162437
Gene ExpressionRAVER2 [ NCBI-GEO ]   RAVER2 [ EBI - ARRAY_EXPRESS ]   RAVER2 [ SEEK ]   RAVER2 [ MEM ]
Gene Expression Viewer (FireBrowse)RAVER2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55225
GTEX Portal (Tissue expression)RAVER2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCJ3
Splice isoforms : SwissVarQ9HCJ3
PhosPhoSitePlusQ9HCJ3
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RAVER2
DMDM Disease mutations55225
Blocks (Seattle)RAVER2
PDB (SRS)1WG1   
PDB (PDBSum)1WG1   
PDB (IMB)1WG1   
PDB (RSDB)1WG1   
Structural Biology KnowledgeBase1WG1   
SCOP (Structural Classification of Proteins)1WG1   
CATH (Classification of proteins structures)1WG1   
SuperfamilyQ9HCJ3
Human Protein AtlasENSG00000162437
Peptide AtlasQ9HCJ3
HPRD11154
IPIIPI00556565   IPI00397768   IPI00910127   IPI00852827   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCJ3
IntAct (EBI)Q9HCJ3
FunCoupENSG00000162437
BioGRIDRAVER2
STRING (EMBL)RAVER2
ZODIACRAVER2
Ontologies - Pathways
QuickGOQ9HCJ3
Ontology : AmiGOmRNA splicing, via spliceosome  nucleic acid binding  RNA binding  nucleus  cytoplasm  
Ontology : EGO-EBImRNA splicing, via spliceosome  nucleic acid binding  RNA binding  nucleus  cytoplasm  
NDEx NetworkRAVER2
Atlas of Cancer Signalling NetworkRAVER2
Wikipedia pathwaysRAVER2
Orthology - Evolution
OrthoDB55225
GeneTree (enSembl)ENSG00000162437
Phylogenetic Trees/Animal Genes : TreeFamRAVER2
HOVERGENQ9HCJ3
HOGENOMQ9HCJ3
Homologs : HomoloGeneRAVER2
Homology/Alignments : Family Browser (UCSC)RAVER2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAVER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAVER2
dbVarRAVER2
ClinVarRAVER2
1000_GenomesRAVER2 
Exome Variant ServerRAVER2
ExAC (Exome Aggregation Consortium)RAVER2 (select the gene name)
Genetic variants : HAPMAP55225
Genomic Variants (DGV)RAVER2 [DGVbeta]
DECIPHERRAVER2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAVER2 
Mutations
ICGC Data PortalRAVER2 
TCGA Data PortalRAVER2 
Broad Tumor PortalRAVER2
OASIS PortalRAVER2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAVER2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAVER2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAVER2
DgiDB (Drug Gene Interaction Database)RAVER2
DoCM (Curated mutations)RAVER2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAVER2 (select a term)
intoGenRAVER2
Cancer3DRAVER2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609953   
Orphanet
MedgenRAVER2
Genetic Testing Registry RAVER2
NextProtQ9HCJ3 [Medical]
TSGene55225
GENETestsRAVER2
Huge Navigator RAVER2 [HugePedia]
snp3D : Map Gene to Disease55225
BioCentury BCIQRAVER2
ClinGenRAVER2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55225
Chemical/Pharm GKB GenePA144596391
Clinical trialRAVER2
Miscellaneous
canSAR (ICR)RAVER2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAVER2
EVEXRAVER2
GoPubMedRAVER2
iHOPRAVER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:50:31 CEST 2017

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