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RAX (retina and anterior neural fold homeobox)

Identity

Alias_symbol (synonym)RX
Other aliasMCOP3
HGNC (Hugo) RAX
LocusID (NCBI) 30062
Atlas_Id 54574
Location 18q21.32  [Link to chromosome band 18q21]
Location_base_pair Starts at 59267035 and ends at 59273393 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAX (18q21.32) / RAX (18q21.32)SMAD4 (18q21.2) / RAX (18q21.32)ZNF638 (2p13.2) / RAX (18q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAX   18662
Cards
Entrez_Gene (NCBI)RAX  30062  retina and anterior neural fold homeobox
AliasesMCOP3; RX
GeneCards (Weizmann)RAX
Ensembl hg19 (Hinxton)ENSG00000134438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134438 [Gene_View]  chr18:59267035-59273393 [Contig_View]  RAX [Vega]
ICGC DataPortalENSG00000134438
TCGA cBioPortalRAX
AceView (NCBI)RAX
Genatlas (Paris)RAX
WikiGenes30062
SOURCE (Princeton)RAX
Genetics Home Reference (NIH)RAX
Genomic and cartography
GoldenPath hg38 (UCSC)RAX  -     chr18:59267035-59273393 -  18q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAX  -     18q21.32   [Description]    (hg19-Feb_2009)
EnsemblRAX - 18q21.32 [CytoView hg19]  RAX - 18q21.32 [CytoView hg38]
Mapping of homologs : NCBIRAX [Mapview hg19]  RAX [Mapview hg38]
OMIM601881   611038   
Gene and transcription
Genbank (Entrez)AB593018 AF115392 BC051901 BC156201 BC157122
RefSeq transcript (Entrez)NM_013435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAX
Cluster EST : UnigeneHs.278957 [ NCBI ]
CGAP (NCI)Hs.278957
Alternative Splicing GalleryENSG00000134438
Gene ExpressionRAX [ NCBI-GEO ]   RAX [ EBI - ARRAY_EXPRESS ]   RAX [ SEEK ]   RAX [ MEM ]
Gene Expression Viewer (FireBrowse)RAX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30062
GTEX Portal (Tissue expression)RAX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2V3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2V3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2V3
Splice isoforms : SwissVarQ9Y2V3
PhosPhoSitePlusQ9Y2V3
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    OAR (PS50803)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    OAR_dom    Rx   
Domain families : Pfam (Sanger)Homeobox (PF00046)    OAR (PF03826)   
Domain families : Pfam (NCBI)pfam00046    pfam03826   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)RAX
DMDM Disease mutations30062
Blocks (Seattle)RAX
SuperfamilyQ9Y2V3
Human Protein AtlasENSG00000134438
Peptide AtlasQ9Y2V3
HPRD03530
IPIIPI00021025   IPI00384235   IPI01025578   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2V3
IntAct (EBI)Q9Y2V3
FunCoupENSG00000134438
BioGRIDRAX
STRING (EMBL)RAX
ZODIACRAX
Ontologies - Pathways
QuickGOQ9Y2V3
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  pattern specification process  visual perception  hypothalamus development  camera-type eye development  positive regulation of transcription from RNA polymerase II promoter  limb development  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  pattern specification process  visual perception  hypothalamus development  camera-type eye development  positive regulation of transcription from RNA polymerase II promoter  limb development  
NDEx NetworkRAX
Atlas of Cancer Signalling NetworkRAX
Wikipedia pathwaysRAX
Orthology - Evolution
OrthoDB30062
GeneTree (enSembl)ENSG00000134438
Phylogenetic Trees/Animal Genes : TreeFamRAX
HOVERGENQ9Y2V3
HOGENOMQ9Y2V3
Homologs : HomoloGeneRAX
Homology/Alignments : Family Browser (UCSC)RAX
Gene fusions - Rearrangements
Fusion : MitelmanSMAD4/RAX [18q21.2/18q21.32]  [t(18;18)(q21;q21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAX
dbVarRAX
ClinVarRAX
1000_GenomesRAX 
Exome Variant ServerRAX
ExAC (Exome Aggregation Consortium)RAX (select the gene name)
Genetic variants : HAPMAP30062
Genomic Variants (DGV)RAX [DGVbeta]
DECIPHERRAX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAX 
Mutations
ICGC Data PortalRAX 
TCGA Data PortalRAX 
Broad Tumor PortalRAX
OASIS PortalRAX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAX
DgiDB (Drug Gene Interaction Database)RAX
DoCM (Curated mutations)RAX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAX (select a term)
intoGenRAX
Cancer3DRAX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601881    611038   
Orphanet3713   
MedgenRAX
Genetic Testing Registry RAX
NextProtQ9Y2V3 [Medical]
TSGene30062
GENETestsRAX
Target ValidationRAX
Huge Navigator RAX [HugePedia]
snp3D : Map Gene to Disease30062
BioCentury BCIQRAX
ClinGenRAX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30062
Chemical/Pharm GKB GenePA38626
Clinical trialRAX
Miscellaneous
canSAR (ICR)RAX (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAX
EVEXRAX
GoPubMedRAX
iHOPRAX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:12:40 CEST 2017

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