Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RAX2 (retina and anterior neural fold homeobox 2)

Identity

Alias_namesRAXL1
retina and anterior neural fold homeobox like 1
Alias_symbol (synonym)MGC15631
ARMD6
CORD11
Other aliasQRX
HGNC (Hugo) RAX2
LocusID (NCBI) 84839
Atlas_Id 72503
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3769091 and ends at 3772221 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAX2   18286
Cards
Entrez_Gene (NCBI)RAX2  84839  retina and anterior neural fold homeobox 2
AliasesARMD6; CORD11; QRX; RAXL1
GeneCards (Weizmann)RAX2
Ensembl hg19 (Hinxton)ENSG00000173976 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173976 [Gene_View]  chr19:3769091-3772221 [Contig_View]  RAX2 [Vega]
ICGC DataPortalENSG00000173976
TCGA cBioPortalRAX2
AceView (NCBI)RAX2
Genatlas (Paris)RAX2
WikiGenes84839
SOURCE (Princeton)RAX2
Genetics Home Reference (NIH)RAX2
Genomic and cartography
GoldenPath hg38 (UCSC)RAX2  -     chr19:3769091-3772221 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAX2  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblRAX2 - 19p13.3 [CytoView hg19]  RAX2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIRAX2 [Mapview hg19]  RAX2 [Mapview hg38]
OMIM605726   610362   610381   613757   
Gene and transcription
Genbank (Entrez)AY211277 BC007284 BC018709 BC032512
RefSeq transcript (Entrez)NM_001319074 NM_032753
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAX2
Cluster EST : UnigeneHs.532691 [ NCBI ]
CGAP (NCI)Hs.532691
Alternative Splicing GalleryENSG00000173976
Gene ExpressionRAX2 [ NCBI-GEO ]   RAX2 [ EBI - ARRAY_EXPRESS ]   RAX2 [ SEEK ]   RAX2 [ MEM ]
Gene Expression Viewer (FireBrowse)RAX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84839
GTEX Portal (Tissue expression)RAX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IS3
Splice isoforms : SwissVarQ96IS3
PhosPhoSitePlusQ96IS3
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Rx   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)RAX2
DMDM Disease mutations84839
Blocks (Seattle)RAX2
SuperfamilyQ96IS3
Human Protein AtlasENSG00000173976
Peptide AtlasQ96IS3
HPRD17508
IPIIPI00063781   IPI01026501   IPI01026460   
Protein Interaction databases
DIP (DOE-UCLA)Q96IS3
IntAct (EBI)Q96IS3
FunCoupENSG00000173976
BioGRIDRAX2
STRING (EMBL)RAX2
ZODIACRAX2
Ontologies - Pathways
QuickGOQ96IS3
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  visual perception  camera-type eye development  positive regulation of transcription from RNA polymerase II promoter  response to stimulus  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  visual perception  camera-type eye development  positive regulation of transcription from RNA polymerase II promoter  response to stimulus  
NDEx NetworkRAX2
Atlas of Cancer Signalling NetworkRAX2
Wikipedia pathwaysRAX2
Orthology - Evolution
OrthoDB84839
GeneTree (enSembl)ENSG00000173976
Phylogenetic Trees/Animal Genes : TreeFamRAX2
HOVERGENQ96IS3
HOGENOMQ96IS3
Homologs : HomoloGeneRAX2
Homology/Alignments : Family Browser (UCSC)RAX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAX2
dbVarRAX2
ClinVarRAX2
1000_GenomesRAX2 
Exome Variant ServerRAX2
ExAC (Exome Aggregation Consortium)RAX2 (select the gene name)
Genetic variants : HAPMAP84839
Genomic Variants (DGV)RAX2 [DGVbeta]
DECIPHERRAX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAX2 
Mutations
ICGC Data PortalRAX2 
TCGA Data PortalRAX2 
Broad Tumor PortalRAX2
OASIS PortalRAX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch RAX2
DgiDB (Drug Gene Interaction Database)RAX2
DoCM (Curated mutations)RAX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAX2 (select a term)
intoGenRAX2
Cancer3DRAX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605726    610362    610381    613757   
Orphanet1843   
MedgenRAX2
Genetic Testing Registry RAX2
NextProtQ96IS3 [Medical]
TSGene84839
GENETestsRAX2
Target ValidationRAX2
Huge Navigator RAX2 [HugePedia]
snp3D : Map Gene to Disease84839
BioCentury BCIQRAX2
ClinGenRAX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84839
Chemical/Pharm GKB GenePA162400734
Clinical trialRAX2
Miscellaneous
canSAR (ICR)RAX2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAX2
EVEXRAX2
GoPubMedRAX2
iHOPRAX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:37:04 CEST 2017

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