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RBAK (RB associated KRAB zinc finger)

Identity

Alias_symbol (synonym)ZNF769
Other alias
HGNC (Hugo) RBAK
LocusID (NCBI) 57786
Atlas_Id 42061
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 5085452 and ends at 5109119 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBAK   17680
Cards
Entrez_Gene (NCBI)RBAK  57786  RB associated KRAB zinc finger
AliasesZNF769
GeneCards (Weizmann)RBAK
Ensembl hg19 (Hinxton)ENSG00000146587 [Gene_View]  chr7:5085452-5109119 [Contig_View]  RBAK [Vega]
Ensembl hg38 (Hinxton)ENSG00000146587 [Gene_View]  chr7:5085452-5109119 [Contig_View]  RBAK [Vega]
ICGC DataPortalENSG00000146587
TCGA cBioPortalRBAK
AceView (NCBI)RBAK
Genatlas (Paris)RBAK
WikiGenes57786
SOURCE (Princeton)RBAK
Genetics Home Reference (NIH)RBAK
Genomic and cartography
GoldenPath hg19 (UCSC)RBAK  -     chr7:5085452-5109119 +  7p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBAK  -     7p22.1   [Description]    (hg38-Dec_2013)
EnsemblRBAK - 7p22.1 [CytoView hg19]  RBAK - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIRBAK [Mapview hg19]  RBAK [Mapview hg38]
OMIM608191   
Gene and transcription
Genbank (Entrez)AK093275 AK293069 AL711327 BC136675 BC136676
RefSeq transcript (Entrez)NM_001204456 NM_021163
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)RBAK
Cluster EST : UnigeneHs.396178 [ NCBI ]
CGAP (NCI)Hs.396178
Alternative Splicing GalleryENSG00000146587
Gene ExpressionRBAK [ NCBI-GEO ]   RBAK [ EBI - ARRAY_EXPRESS ]   RBAK [ SEEK ]   RBAK [ MEM ]
Gene Expression Viewer (FireBrowse)RBAK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57786
GTEX Portal (Tissue expression)RBAK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYW8
Splice isoforms : SwissVarQ9NYW8
PhosPhoSitePlusQ9NYW8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)RBAK
DMDM Disease mutations57786
Blocks (Seattle)RBAK
SuperfamilyQ9NYW8
Human Protein AtlasENSG00000146587
Peptide AtlasQ9NYW8
HPRD16296
IPIIPI00893269   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYW8
IntAct (EBI)Q9NYW8
FunCoupENSG00000146587
BioGRIDRBAK
STRING (EMBL)RBAK
ZODIACRBAK
Ontologies - Pathways
QuickGOQ9NYW8
Ontology : AmiGOnucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  negative regulation of transcription, DNA-templated  
NDEx NetworkRBAK
Atlas of Cancer Signalling NetworkRBAK
Wikipedia pathwaysRBAK
Orthology - Evolution
OrthoDB57786
GeneTree (enSembl)ENSG00000146587
Phylogenetic Trees/Animal Genes : TreeFamRBAK
HOVERGENQ9NYW8
HOGENOMQ9NYW8
Homologs : HomoloGeneRBAK
Homology/Alignments : Family Browser (UCSC)RBAK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBAK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBAK
dbVarRBAK
ClinVarRBAK
1000_GenomesRBAK 
Exome Variant ServerRBAK
ExAC (Exome Aggregation Consortium)RBAK (select the gene name)
Genetic variants : HAPMAP57786
Genomic Variants (DGV)RBAK [DGVbeta]
DECIPHER (Syndromes)7:5085452-5109119  ENSG00000146587
CONAN: Copy Number AnalysisRBAK 
Mutations
ICGC Data PortalRBAK 
TCGA Data PortalRBAK 
Broad Tumor PortalRBAK
OASIS PortalRBAK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBAK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBAK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBAK
DgiDB (Drug Gene Interaction Database)RBAK
DoCM (Curated mutations)RBAK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBAK (select a term)
intoGenRBAK
Cancer3DRBAK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608191   
Orphanet
MedgenRBAK
Genetic Testing Registry RBAK
NextProtQ9NYW8 [Medical]
TSGene57786
GENETestsRBAK
Huge Navigator RBAK [HugePedia]
snp3D : Map Gene to Disease57786
BioCentury BCIQRBAK
ClinGenRBAK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57786
Chemical/Pharm GKB GenePA162400745
Clinical trialRBAK
Miscellaneous
canSAR (ICR)RBAK (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBAK
EVEXRBAK
GoPubMedRBAK
iHOPRBAK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:31 CET 2017

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