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RBBP9 (RB binding protein 9, serine hydrolase)

Identity

Alias_namesretinoblastoma-binding protein 9
retinoblastoma binding protein 9
Alias_symbol (synonym)Bog
Other aliasBOG
RBBP10
HGNC (Hugo) RBBP9
LocusID (NCBI) 10741
Atlas_Id 42067
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 18486541 and ends at 18497243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBBP9   9892
Cards
Entrez_Gene (NCBI)RBBP9  10741  RB binding protein 9, serine hydrolase
AliasesBOG; RBBP10
GeneCards (Weizmann)RBBP9
Ensembl hg19 (Hinxton)ENSG00000089050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089050 [Gene_View]  ENSG00000089050 [Sequence]  chr20:18486541-18497243 [Contig_View]  RBBP9 [Vega]
ICGC DataPortalENSG00000089050
TCGA cBioPortalRBBP9
AceView (NCBI)RBBP9
Genatlas (Paris)RBBP9
WikiGenes10741
SOURCE (Princeton)RBBP9
Genetics Home Reference (NIH)RBBP9
Genomic and cartography
GoldenPath hg38 (UCSC)RBBP9  -     chr20:18486541-18497243 -  20p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBBP9  -     20p11.23   [Description]    (hg19-Feb_2009)
EnsemblRBBP9 - 20p11.23 [CytoView hg19]  RBBP9 - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBIRBBP9 [Mapview hg19]  RBBP9 [Mapview hg38]
OMIM602908   
Gene and transcription
Genbank (Entrez)AF039564 AF237576 AK023897 AL832411 BC015938
RefSeq transcript (Entrez)NM_006606 NM_153328
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBBP9
Cluster EST : UnigeneHs.69330 [ NCBI ]
CGAP (NCI)Hs.69330
Alternative Splicing GalleryENSG00000089050
Gene ExpressionRBBP9 [ NCBI-GEO ]   RBBP9 [ EBI - ARRAY_EXPRESS ]   RBBP9 [ SEEK ]   RBBP9 [ MEM ]
Gene Expression Viewer (FireBrowse)RBBP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10741
GTEX Portal (Tissue expression)RBBP9
Human Protein AtlasENSG00000089050-RBBP9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75884   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75884  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75884
Splice isoforms : SwissVarO75884
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusO75884
Domains : Interpro (EBI)AB_hydrolase    Hydrolase_RBBP9/YdeN   
Domain families : Pfam (Sanger)Ser_hydrolase (PF06821)   
Domain families : Pfam (NCBI)pfam06821   
Conserved Domain (NCBI)RBBP9
DMDM Disease mutations10741
Blocks (Seattle)RBBP9
PDB (SRS)2QS9   
PDB (PDBSum)2QS9   
PDB (IMB)2QS9   
PDB (RSDB)2QS9   
Structural Biology KnowledgeBase2QS9   
SCOP (Structural Classification of Proteins)2QS9   
CATH (Classification of proteins structures)2QS9   
SuperfamilyO75884
Human Protein Atlas [tissue]ENSG00000089050-RBBP9 [tissue]
Peptide AtlasO75884
HPRD04217
IPIIPI00034181   IPI00218599   IPI00953469   
Protein Interaction databases
DIP (DOE-UCLA)O75884
IntAct (EBI)O75884
FunCoupENSG00000089050
BioGRIDRBBP9
STRING (EMBL)RBBP9
ZODIACRBBP9
Ontologies - Pathways
QuickGOO75884
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  hydrolase activity  regulation of cell proliferation  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  hydrolase activity  regulation of cell proliferation  
NDEx NetworkRBBP9
Atlas of Cancer Signalling NetworkRBBP9
Wikipedia pathwaysRBBP9
Orthology - Evolution
OrthoDB10741
GeneTree (enSembl)ENSG00000089050
Phylogenetic Trees/Animal Genes : TreeFamRBBP9
HOVERGENO75884
HOGENOMO75884
Homologs : HomoloGeneRBBP9
Homology/Alignments : Family Browser (UCSC)RBBP9
Gene fusions - Rearrangements
Fusion : QuiverRBBP9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBBP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBBP9
dbVarRBBP9
ClinVarRBBP9
1000_GenomesRBBP9 
Exome Variant ServerRBBP9
ExAC (Exome Aggregation Consortium)ENSG00000089050
GNOMAD BrowserENSG00000089050
Varsome BrowserRBBP9
Genetic variants : HAPMAP10741
Genomic Variants (DGV)RBBP9 [DGVbeta]
DECIPHERRBBP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBBP9 
Mutations
ICGC Data PortalRBBP9 
TCGA Data PortalRBBP9 
Broad Tumor PortalRBBP9
OASIS PortalRBBP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBBP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBBP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBBP9
DgiDB (Drug Gene Interaction Database)RBBP9
DoCM (Curated mutations)RBBP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBBP9 (select a term)
intoGenRBBP9
Cancer3DRBBP9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602908   
Orphanet
DisGeNETRBBP9
MedgenRBBP9
Genetic Testing Registry RBBP9
NextProtO75884 [Medical]
TSGene10741
GENETestsRBBP9
Target ValidationRBBP9
Huge Navigator RBBP9 [HugePedia]
snp3D : Map Gene to Disease10741
BioCentury BCIQRBBP9
ClinGenRBBP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10741
Chemical/Pharm GKB GenePA34256
Clinical trialRBBP9
Miscellaneous
canSAR (ICR)RBBP9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBBP9
EVEXRBBP9
GoPubMedRBBP9
iHOPRBBP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:34:48 CET 2018

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