Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RBFA (ribosome binding factor A)

Identity

Alias (NCBI)C18orf22
HsT169
HGNC (Hugo) RBFA
HGNC Alias symbFLJ21172
HsT169
HGNC Previous nameC18orf22
HGNC Previous namechromosome 18 open reading frame 22
LocusID (NCBI) 79863
Atlas_Id 72506
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 80034346 and ends at 80050652 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBFA (18q23) / RBFA (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RBFA   26120
Cards
Entrez_Gene (NCBI)RBFA    ribosome binding factor A
AliasesC18orf22; HsT169
GeneCards (Weizmann)RBFA
Ensembl hg19 (Hinxton)ENSG00000101546 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101546 [Gene_View]  ENSG00000101546 [Sequence]  chr18:80034346-80050652 [Contig_View]  RBFA [Vega]
ICGC DataPortalENSG00000101546
TCGA cBioPortalRBFA
AceView (NCBI)RBFA
Genatlas (Paris)RBFA
SOURCE (Princeton)RBFA
Genetics Home Reference (NIH)RBFA
Genomic and cartography
GoldenPath hg38 (UCSC)RBFA  -     chr18:80034346-80050652 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBFA  -     18q23   [Description]    (hg19-Feb_2009)
GoldenPathRBFA - 18q23 [CytoView hg19]  RBFA - 18q23 [CytoView hg38]
ImmunoBaseENSG00000101546
genome Data Viewer NCBIRBFA [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF261073 AF439745 AK024825 AK124595 AK311239
RefSeq transcript (Entrez)NM_001171967 NM_024805
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBFA
Alternative Splicing GalleryENSG00000101546
Gene ExpressionRBFA [ NCBI-GEO ]   RBFA [ EBI - ARRAY_EXPRESS ]   RBFA [ SEEK ]   RBFA [ MEM ]
Gene Expression Viewer (FireBrowse)RBFA [ Firebrowse - Broad ]
GenevisibleExpression of RBFA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79863
GTEX Portal (Tissue expression)RBFA
Human Protein AtlasENSG00000101546-RBFA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0V3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0V3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0V3
Splice isoforms : SwissVarQ8N0V3
PhosPhoSitePlusQ8N0V3
Domaine pattern : Prosite (Expaxy)RBFA (PS01319)   
Domains : Interpro (EBI)KH_dom-like_a/b    RbfA    RbfA_dom_sf    RBFA_mitochondrial    Ribosome-bd_factorA_CS   
Domain families : Pfam (Sanger)RBFA (PF02033)   
Domain families : Pfam (NCBI)pfam02033   
Conserved Domain (NCBI)RBFA
Blocks (Seattle)RBFA
PDB (RSDB)2E7G   
PDB Europe2E7G   
PDB (PDBSum)2E7G   
PDB (IMB)2E7G   
Structural Biology KnowledgeBase2E7G   
SCOP (Structural Classification of Proteins)2E7G   
CATH (Classification of proteins structures)2E7G   
SuperfamilyQ8N0V3
Human Protein Atlas [tissue]ENSG00000101546-RBFA [tissue]
Peptide AtlasQ8N0V3
HPRD07959
IPIIPI00103853   IPI00645897   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0V3
IntAct (EBI)Q8N0V3
BioGRIDRBFA
STRING (EMBL)RBFA
ZODIACRBFA
Ontologies - Pathways
QuickGOQ8N0V3
Ontology : AmiGOmolecular_function  protein binding  cellular_component  mitochondrion  rRNA processing  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  mitochondrion  rRNA processing  biological_process  
NDEx NetworkRBFA
Atlas of Cancer Signalling NetworkRBFA
Wikipedia pathwaysRBFA
Orthology - Evolution
OrthoDB79863
GeneTree (enSembl)ENSG00000101546
Phylogenetic Trees/Animal Genes : TreeFamRBFA
HOGENOMQ8N0V3
Homologs : HomoloGeneRBFA
Homology/Alignments : Family Browser (UCSC)RBFA
Gene fusions - Rearrangements
Fusion : QuiverRBFA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBFA [hg38]
dbVarRBFA
ClinVarRBFA
MonarchRBFA
1000_GenomesRBFA 
Exome Variant ServerRBFA
GNOMAD BrowserENSG00000101546
Varsome BrowserRBFA
Genomic Variants (DGV)RBFA [DGVbeta]
DECIPHERRBFA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBFA 
Mutations
ICGC Data PortalRBFA 
TCGA Data PortalRBFA 
Broad Tumor PortalRBFA
OASIS PortalRBFA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBFA  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBFA
Mutations and Diseases : HGMDRBFA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBFA
DgiDB (Drug Gene Interaction Database)RBFA
DoCM (Curated mutations)RBFA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBFA (select a term)
intoGenRBFA
Cancer3DRBFA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBFA
MedgenRBFA
Genetic Testing Registry RBFA
NextProtQ8N0V3 [Medical]
GENETestsRBFA
Target ValidationRBFA
Huge Navigator RBFA [HugePedia]
ClinGenRBFA
Clinical trials, drugs, therapy
MyCancerGenomeRBFA
Protein Interactions : CTD
Pharm GKB GenePA134885774
Clinical trialRBFA
Miscellaneous
canSAR (ICR)RBFA (select the gene name)
HarmonizomeRBFA
DataMed IndexRBFA
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBFA
EVEXRBFA
GoPubMedRBFA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:24:17 CET 2020
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