Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RBFA (ribosome binding factor A (putative))

Identity

Alias_namesC18orf22
chromosome 18 open reading frame 22
Alias_symbol (synonym)FLJ21172
HsT169
Other alias
HGNC (Hugo) RBFA
LocusID (NCBI) 79863
Atlas_Id 72506
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 77794346 and ends at 77810652 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBFA (18q23) / RBFA (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBFA   26120
Cards
Entrez_Gene (NCBI)RBFA  79863  ribosome binding factor A (putative)
AliasesC18orf22; HsT169
GeneCards (Weizmann)RBFA
Ensembl hg19 (Hinxton) [Gene_View]  chr18:77794346-77810652 [Contig_View]  RBFA [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:77794346-77810652 [Contig_View]  RBFA [Vega]
TCGA cBioPortalRBFA
AceView (NCBI)RBFA
Genatlas (Paris)RBFA
WikiGenes79863
SOURCE (Princeton)RBFA
Genetics Home Reference (NIH)RBFA
Genomic and cartography
GoldenPath hg19 (UCSC)RBFA  -     chr18:77794346-77810652 +  18q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBFA  -     18q23   [Description]    (hg38-Dec_2013)
EnsemblRBFA - 18q23 [CytoView hg19]  RBFA - 18q23 [CytoView hg38]
Mapping of homologs : NCBIRBFA [Mapview hg19]  RBFA [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF261073 AF439745 AK024825 AK124595 AK311239
RefSeq transcript (Entrez)NM_001171967 NM_024805
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929411
Consensus coding sequences : CCDS (NCBI)RBFA
Cluster EST : UnigeneHs.728931 [ NCBI ]
CGAP (NCI)Hs.728931
Gene ExpressionRBFA [ NCBI-GEO ]   RBFA [ EBI - ARRAY_EXPRESS ]   RBFA [ SEEK ]   RBFA [ MEM ]
Gene Expression Viewer (FireBrowse)RBFA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79863
GTEX Portal (Tissue expression)RBFA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0V3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0V3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0V3
Splice isoforms : SwissVarQ8N0V3
PhosPhoSitePlusQ8N0V3
Domaine pattern : Prosite (Expaxy)RBFA (PS01319)   
Domains : Interpro (EBI)KH_dom-like_a/b    Ribosome-bd_facA    Ribosome-bd_facA_dom    Ribosome-bd_factorA_CS   
Domain families : Pfam (Sanger)RBFA (PF02033)   
Domain families : Pfam (NCBI)pfam02033   
Conserved Domain (NCBI)RBFA
DMDM Disease mutations79863
Blocks (Seattle)RBFA
PDB (SRS)2E7G   
PDB (PDBSum)2E7G   
PDB (IMB)2E7G   
PDB (RSDB)2E7G   
Structural Biology KnowledgeBase2E7G   
SCOP (Structural Classification of Proteins)2E7G   
CATH (Classification of proteins structures)2E7G   
SuperfamilyQ8N0V3
Peptide AtlasQ8N0V3
HPRD07959
IPIIPI00103853   IPI00645897   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0V3
IntAct (EBI)Q8N0V3
BioGRIDRBFA
STRING (EMBL)RBFA
ZODIACRBFA
Ontologies - Pathways
QuickGOQ8N0V3
Ontology : AmiGOmolecular_function  protein binding  cellular_component  mitochondrion  rRNA processing  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  mitochondrion  rRNA processing  biological_process  
NDEx NetworkRBFA
Atlas of Cancer Signalling NetworkRBFA
Wikipedia pathwaysRBFA
Orthology - Evolution
OrthoDB79863
Phylogenetic Trees/Animal Genes : TreeFamRBFA
HOVERGENQ8N0V3
HOGENOMQ8N0V3
Homologs : HomoloGeneRBFA
Homology/Alignments : Family Browser (UCSC)RBFA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBFA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBFA
dbVarRBFA
ClinVarRBFA
1000_GenomesRBFA 
Exome Variant ServerRBFA
ExAC (Exome Aggregation Consortium)RBFA (select the gene name)
Genetic variants : HAPMAP79863
Genomic Variants (DGV)RBFA [DGVbeta]
DECIPHER (Syndromes)18:77794346-77810652  
CONAN: Copy Number AnalysisRBFA 
Mutations
ICGC Data PortalRBFA 
TCGA Data PortalRBFA 
Broad Tumor PortalRBFA
OASIS PortalRBFA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBFA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBFA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBFA
DgiDB (Drug Gene Interaction Database)RBFA
DoCM (Curated mutations)RBFA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBFA (select a term)
intoGenRBFA
Cancer3DRBFA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBFA
Genetic Testing Registry RBFA
NextProtQ8N0V3 [Medical]
TSGene79863
GENETestsRBFA
Huge Navigator RBFA [HugePedia]
snp3D : Map Gene to Disease79863
BioCentury BCIQRBFA
ClinGenRBFA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79863
Chemical/Pharm GKB GenePA134885774
Clinical trialRBFA
Miscellaneous
canSAR (ICR)RBFA (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBFA
EVEXRBFA
GoPubMedRBFA
iHOPRBFA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:36 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.