Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RBFOX3 (RNA binding protein, fox-1 homolog 3)

Identity

Other aliasFOX-3
FOX3
HRNBP3
NEUN
HGNC (Hugo) RBFOX3
LocusID (NCBI) 146713
Atlas_Id 56785
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79089345 and ends at 79516148 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBFOX3 (17q25.3) / C4orf22 (4q21.21)RBFOX3 (17q25.3) / RYR2 (1q43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBFOX3   27097
Cards
Entrez_Gene (NCBI)RBFOX3  146713  RNA binding protein, fox-1 homolog 3
AliasesFOX-3; FOX3; HRNBP3; NEUN
GeneCards (Weizmann)RBFOX3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:79089345-79516148 [Contig_View]  RBFOX3 [Vega]
TCGA cBioPortalRBFOX3
AceView (NCBI)RBFOX3
Genatlas (Paris)RBFOX3
WikiGenes146713
SOURCE (Princeton)RBFOX3
Genetics Home Reference (NIH)RBFOX3
Genomic and cartography
GoldenPath hg38 (UCSC)RBFOX3  -     chr17:79089345-79516148 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBFOX3  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblRBFOX3 - 17q25.3 [CytoView hg19]  RBFOX3 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIRBFOX3 [Mapview hg19]  RBFOX3 [Mapview hg38]
OMIM616999   
Gene and transcription
Genbank (Entrez)AK054893 AK124644 AK126788 AK128131 AK293617
RefSeq transcript (Entrez)NM_001025448 NM_001039904 NM_001082575 NM_001350451 NM_001350453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBFOX3
Cluster EST : UnigeneHs.574437 [ NCBI ]
CGAP (NCI)Hs.574437
Gene ExpressionRBFOX3 [ NCBI-GEO ]   RBFOX3 [ EBI - ARRAY_EXPRESS ]   RBFOX3 [ SEEK ]   RBFOX3 [ MEM ]
Gene Expression Viewer (FireBrowse)RBFOX3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146713
GTEX Portal (Tissue expression)RBFOX3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFN3
Splice isoforms : SwissVarA6NFN3
PhosPhoSitePlusA6NFN3
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Fox-1_C_dom    FOX1_RRM    Nucleotide-bd_a/b_plait    RNA-bd_Fox-1    RRM_dom   
Domain families : Pfam (Sanger)Fox-1_C (PF12414)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam12414    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBFOX3
DMDM Disease mutations146713
Blocks (Seattle)RBFOX3
SuperfamilyA6NFN3
Peptide AtlasA6NFN3
IPIIPI00401566   IPI00908333   
Protein Interaction databases
DIP (DOE-UCLA)A6NFN3
IntAct (EBI)A6NFN3
BioGRIDRBFOX3
STRING (EMBL)RBFOX3
ZODIACRBFOX3
Ontologies - Pathways
QuickGOA6NFN3
Ontology : AmiGOregulation of alternative mRNA splicing, via spliceosome  DNA binding  mRNA binding  nucleus  cytoplasm  mRNA processing  nervous system development  RNA splicing  perikaryon  
Ontology : EGO-EBIregulation of alternative mRNA splicing, via spliceosome  DNA binding  mRNA binding  nucleus  cytoplasm  mRNA processing  nervous system development  RNA splicing  perikaryon  
NDEx NetworkRBFOX3
Atlas of Cancer Signalling NetworkRBFOX3
Wikipedia pathwaysRBFOX3
Orthology - Evolution
OrthoDB146713
Phylogenetic Trees/Animal Genes : TreeFamRBFOX3
HOVERGENA6NFN3
HOGENOMA6NFN3
Homologs : HomoloGeneRBFOX3
Homology/Alignments : Family Browser (UCSC)RBFOX3
Gene fusions - Rearrangements
Tumor Fusion PortalRBFOX3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBFOX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBFOX3
dbVarRBFOX3
ClinVarRBFOX3
1000_GenomesRBFOX3 
Exome Variant ServerRBFOX3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP146713
Genomic Variants (DGV)RBFOX3 [DGVbeta]
DECIPHERRBFOX3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBFOX3 
Mutations
ICGC Data PortalRBFOX3 
TCGA Data PortalRBFOX3 
Broad Tumor PortalRBFOX3
OASIS PortalRBFOX3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBFOX3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBFOX3
BioMutasearch RBFOX3
DgiDB (Drug Gene Interaction Database)RBFOX3
DoCM (Curated mutations)RBFOX3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBFOX3 (select a term)
intoGenRBFOX3
Cancer3DRBFOX3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616999   
Orphanet
DisGeNETRBFOX3
MedgenRBFOX3
Genetic Testing Registry RBFOX3
NextProtA6NFN3 [Medical]
TSGene146713
GENETestsRBFOX3
Target ValidationRBFOX3
Huge Navigator RBFOX3 [HugePedia]
snp3D : Map Gene to Disease146713
BioCentury BCIQRBFOX3
ClinGenRBFOX3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146713
Chemical/Pharm GKB GenePA166048977
Clinical trialRBFOX3
Miscellaneous
canSAR (ICR)RBFOX3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBFOX3
EVEXRBFOX3
GoPubMedRBFOX3
iHOPRBFOX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:31:54 CET 2017

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