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RBM10 (RNA binding motif protein 10)

Identity

Other namesDXS8237E
GPATC9
GPATCH9
S1-1
TARPS
ZRANB5
HGNC (Hugo) RBM10
LocusID (NCBI) 8241
Location Xp11.23
Location_base_pair Starts at 47004617 and ends at 47046214 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RBM10   9896
Cards
Entrez_Gene (NCBI)RBM10  8241  RNA binding motif protein 10
GeneCards (Weizmann)RBM10
Ensembl hg19 (Hinxton)ENSG00000182872 [Gene_View]  chrX:47004617-47046214 [Contig_View]  RBM10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182872 [Gene_View]  chrX:47004617-47046214 [Contig_View]  RBM10 [Vega]
ICGC DataPortalENSG00000182872
cBioPortalRBM10
AceView (NCBI)RBM10
Genatlas (Paris)RBM10
WikiGenes8241
SOURCE (Princeton)RBM10
Genomic and cartography
GoldenPath hg19 (UCSC)RBM10  -     chrX:47004617-47046214 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM10  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblRBM10 - Xp11.23 [CytoView hg19]  RBM10 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIRBM10 [Mapview hg19]  RBM10 [Mapview hg38]
OMIM300080   311900   
Gene and transcription
Genbank (Entrez)AK000962 AK024839 AK025854 AK098115 AK225175
RefSeq transcript (Entrez)NM_001204466 NM_001204467 NM_001204468 NM_005676 NM_152856
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_012548 NT_079573 NW_001842362 NW_004929439
Consensus coding sequences : CCDS (NCBI)RBM10
Cluster EST : UnigeneHs.401509 [ NCBI ]
CGAP (NCI)Hs.401509
Alternative Splicing : Fast-db (Paris)GSHG0031489
Alternative Splicing GalleryENSG00000182872
Gene ExpressionRBM10 [ NCBI-GEO ]     RBM10 [ SEEK ]   RBM10 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98175 (Uniprot)
NextProtP98175  [Medical]
With graphics : InterProP98175
Splice isoforms : SwissVarP98175 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    RRM (PS50102)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)G_patch_dom    Nucleotide-bd_a/b_plait    RRM_dom    Znf_C2H2    Znf_C2H2-like    Znf_RanBP2   
Related proteins : CluSTrP98175
Domain families : Pfam (Sanger)G-patch (PF01585)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam01585    pfam00641   
Domain families : Smart (EMBL)G_patch (SM00443)  RRM (SM00360)  ZnF_C2H2 (SM00355)  ZnF_RBZ (SM00547)  
DMDM Disease mutations8241
Blocks (Seattle)P98175
PDB (SRS)2LXI    2M2B   
PDB (PDBSum)2LXI    2M2B   
PDB (IMB)2LXI    2M2B   
PDB (RSDB)2LXI    2M2B   
Human Protein AtlasENSG00000182872
Peptide AtlasP98175
HPRD02095
IPIIPI00375731   IPI00915253   IPI00549342   IPI00916428   IPI01008793   
Protein Interaction databases
DIP (DOE-UCLA)P98175
IntAct (EBI)P98175
FunCoupENSG00000182872
BioGRIDRBM10
IntegromeDBRBM10
STRING (EMBL)RBM10
Ontologies - Pathways
QuickGOP98175
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleotide binding  protein binding  nucleus  nucleolus  mRNA processing  biological_process  zinc ion binding  negative regulation of cell proliferation  RNA splicing  protein complex binding  positive regulation of smooth muscle cell apoptotic process  identical protein binding  poly(A) RNA binding  3'-UTR-mediated mRNA stabilization  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleotide binding  protein binding  nucleus  nucleolus  mRNA processing  biological_process  zinc ion binding  negative regulation of cell proliferation  RNA splicing  protein complex binding  positive regulation of smooth muscle cell apoptotic process  identical protein binding  poly(A) RNA binding  3'-UTR-mediated mRNA stabilization  
Protein Interaction DatabaseRBM10
DoCM (Curated mutations)RBM10
Wikipedia pathwaysRBM10
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRBM10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM10
dbVarRBM10
ClinVarRBM10
1000_GenomesRBM10 
Exome Variant ServerRBM10
SNP (GeneSNP Utah)RBM10
SNP : HGBaseRBM10
Genetic variants : HAPMAPRBM10
Genomic VariantsRBM10  RBM10 [DGVbeta]
Mutations
ICGC Data PortalENSG00000182872 
Somatic Mutations in Cancer : COSMICRBM10 
CONAN: Copy Number AnalysisRBM10 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:47004617-47046214
Mutations and Diseases : HGMDRBM10
OMIM300080    311900   
MedgenRBM10
NextProtP98175 [Medical]
GENETestsRBM10
Disease Genetic AssociationRBM10
Huge Navigator RBM10 [HugePedia]  RBM10 [HugeCancerGEM]
snp3D : Map Gene to Disease8241
DGIdb (Drug Gene Interaction db)RBM10
General knowledge
Homologs : HomoloGeneRBM10
Homology/Alignments : Family Browser (UCSC)RBM10
Phylogenetic Trees/Animal Genes : TreeFamRBM10
Chemical/Protein Interactions : CTD8241
Chemical/Pharm GKB GenePA34259
Clinical trialRBM10
Cancer Resource (Charite)ENSG00000182872
Other databases
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
CoreMineRBM10
GoPubMedRBM10
iHOPRBM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:07:30 CET 2014

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