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RBM10 (RNA binding motif protein 10)

Identity

Other namesDXS8237E
GPATC9
GPATCH9
S1-1
TARPS
ZRANB5
HGNC (Hugo) RBM10
LocusID (NCBI) 8241
Atlas_Id 45786
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 47004617 and ends at 47046214 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBM10 (Xp11.23) / CMAS (12p12.1)RBM10 (Xp11.23) / CTC1 (17p13.1)RBM10 (Xp11.23) / JADE3 (Xp11.23)
RBM10 (Xp11.23) / PAPD4 (5q14.1)RBM10 (Xp11.23) / PPT2 (6p21.32)RBM10 (Xp11.23) / TFE3 (Xp11.23)
RBM10 (Xp11.23) / UBC (12q24.31)RBM10 (Xp11.23) / WWP2 (16q22.1)RBM10 Xp11.23 / CMAS 12p12.1
RBM10 Xp11.23 PHF16

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM10   9896
Cards
Entrez_Gene (NCBI)RBM10  8241  RNA binding motif protein 10
AliasesDXS8237E; GPATC9; GPATCH9; S1-1; 
TARPS; ZRANB5
GeneCards (Weizmann)RBM10
Ensembl hg19 (Hinxton)ENSG00000182872 [Gene_View]  chrX:47004617-47046214 [Contig_View]  RBM10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182872 [Gene_View]  chrX:47004617-47046214 [Contig_View]  RBM10 [Vega]
ICGC DataPortalENSG00000182872
TCGA cBioPortalRBM10
AceView (NCBI)RBM10
Genatlas (Paris)RBM10
WikiGenes8241
SOURCE (Princeton)RBM10
Genomic and cartography
GoldenPath hg19 (UCSC)RBM10  -     chrX:47004617-47046214 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM10  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblRBM10 - Xp11.23 [CytoView hg19]  RBM10 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIRBM10 [Mapview hg19]  RBM10 [Mapview hg38]
OMIM300080   311900   
Gene and transcription
Genbank (Entrez)AK000962 AK024839 AK025854 AK098115 AK225175
RefSeq transcript (Entrez)NM_001204466 NM_001204467 NM_001204468 NM_005676 NM_152856
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012548 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)RBM10
Cluster EST : UnigeneHs.401509 [ NCBI ]
CGAP (NCI)Hs.401509
Alternative Splicing GalleryENSG00000182872
Gene ExpressionRBM10 [ NCBI-GEO ]   RBM10 [ EBI - ARRAY_EXPRESS ]   RBM10 [ SEEK ]   RBM10 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8241
GTEX Portal (Tissue expression)RBM10
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98175 (Uniprot)
NextProtP98175  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98175
Splice isoforms : SwissVarP98175 (Swissvar)
PhosPhoSitePlusP98175
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    RRM (PS50102)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)G_patch_dom    Nucleotide-bd_a/b_plait    RRM_dom    Znf_C2H2    Znf_C2H2-like    Znf_RanBP2   
Domain families : Pfam (Sanger)G-patch (PF01585)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam01585    pfam00641   
Domain families : Smart (EMBL)G_patch (SM00443)  RRM (SM00360)  ZnF_C2H2 (SM00355)  ZnF_RBZ (SM00547)  
DMDM Disease mutations8241
Blocks (Seattle)RBM10
PDB (SRS)2LXI    2M2B    2MXV    2MXW   
PDB (PDBSum)2LXI    2M2B    2MXV    2MXW   
PDB (IMB)2LXI    2M2B    2MXV    2MXW   
PDB (RSDB)2LXI    2M2B    2MXV    2MXW   
Structural Biology KnowledgeBase2LXI    2M2B    2MXV    2MXW   
SCOP (Structural Classification of Proteins)2LXI    2M2B    2MXV    2MXW   
CATH (Classification of proteins structures)2LXI    2M2B    2MXV    2MXW   
SuperfamilyP98175
Human Protein AtlasENSG00000182872
Peptide AtlasP98175
HPRD02095
IPIIPI00375731   IPI00915253   IPI00549342   IPI00916428   IPI01008793   
Protein Interaction databases
DIP (DOE-UCLA)P98175
IntAct (EBI)P98175
FunCoupENSG00000182872
BioGRIDRBM10
STRING (EMBL)RBM10
ZODIACRBM10
Ontologies - Pathways
QuickGOP98175
Ontology : AmiGOnucleotide binding  regulation of alternative mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  mRNA processing  biological_process  zinc ion binding  RNA splicing  protein complex binding  identical protein binding  regulation of apoptotic process  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  regulation of alternative mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  mRNA processing  biological_process  zinc ion binding  RNA splicing  protein complex binding  identical protein binding  regulation of apoptotic process  poly(A) RNA binding  
NDEx Network
Atlas of Cancer Signalling NetworkRBM10
Wikipedia pathwaysRBM10
Orthology - Evolution
OrthoDB8241
GeneTree (enSembl)ENSG00000182872
Phylogenetic Trees/Animal Genes : TreeFamRBM10
Homologs : HomoloGeneRBM10
Homology/Alignments : Family Browser (UCSC)RBM10
Gene fusions - Rearrangements
Fusion: TCGARBM10 Xp11.23 CMAS 12p12.1 LUAD
Fusion: TCGARBM10 Xp11.23 PHF16 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerRBM10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM10
dbVarRBM10
ClinVarRBM10
1000_GenomesRBM10 
Exome Variant ServerRBM10
ExAC (Exome Aggregation Consortium)RBM10 (select the gene name)
Genetic variants : HAPMAP8241
Genomic Variants (DGV)RBM10 [DGVbeta]
Mutations
ICGC Data PortalRBM10 
TCGA Data PortalRBM10 
Broad Tumor PortalRBM10
OASIS PortalRBM10 [ Somatic mutations - Copy number]
Cancer Gene: CensusRBM10 
Somatic Mutations in Cancer : COSMICRBM10 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RBM10
DgiDB (Drug Gene Interaction Database)RBM10
DoCM (Curated mutations)RBM10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM10 (select a term)
intoGenRBM10
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:47004617-47046214  ENSG00000182872
CONAN: Copy Number AnalysisRBM10 
Mutations and Diseases : HGMDRBM10
OMIM300080    311900   
MedgenRBM10
Genetic Testing Registry RBM10
NextProtP98175 [Medical]
TSGene8241
GENETestsRBM10
Huge Navigator RBM10 [HugePedia]
snp3D : Map Gene to Disease8241
BioCentury BCIQRBM10
ClinGenRBM10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8241
Chemical/Pharm GKB GenePA34259
Clinical trialRBM10
Miscellaneous
canSAR (ICR)RBM10 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM10
EVEXRBM10
GoPubMedRBM10
iHOPRBM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 9 19:11:54 CEST 2016

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