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RBM10 (RNA binding motif protein 10)

Identity

Alias (NCBI)DXS8237E
GPATC9
GPATCH9
S1-1
TARPS
ZRANB5
HGNC (Hugo) RBM10
HGNC Alias symbDXS8237E
KIAA0122
GPATC9
ZRANB5
GPATCH9
S1-1
LocusID (NCBI) 8241
Atlas_Id 45786
Location Xp11.3  [Link to chromosome band Xp11]
Location_base_pair Starts at 47145221 and ends at 47186813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBM10 (Xp11.23) / CMAS (12p12.1)RBM10 (Xp11.23) / CTC1 (17p13.1)RBM10 (Xp11.23) / JADE3 (Xp11.23)
RBM10 (Xp11.23) / PAPD4 (5q14.1)RBM10 (Xp11.23) / PPT2 (6p21.32)RBM10 (Xp11.23) / TFE3 (Xp11.23)
RBM10 (Xp11.23) / UBC (12q24.31)RBM10 (Xp11.23) / WWP2 (16q22.1)RBM10 Xp11.23 / CMAS 12p12.1
RBM10 Xp11.23 PHF16

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBM10   9896
Cards
Entrez_Gene (NCBI)RBM10    RNA binding motif protein 10
AliasesDXS8237E; GPATC9; GPATCH9; S1-1; 
TARPS; ZRANB5
GeneCards (Weizmann)RBM10
Ensembl hg19 (Hinxton)ENSG00000182872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182872 [Gene_View]  ENSG00000182872 [Sequence]  chrX:47145221-47186813 [Contig_View]  RBM10 [Vega]
ICGC DataPortalENSG00000182872
TCGA cBioPortalRBM10
AceView (NCBI)RBM10
Genatlas (Paris)RBM10
SOURCE (Princeton)RBM10
Genetics Home Reference (NIH)RBM10
Genomic and cartography
GoldenPath hg38 (UCSC)RBM10  -     chrX:47145221-47186813 +  Xp11.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM10  -     Xp11.3   [Description]    (hg19-Feb_2009)
GoldenPathRBM10 - Xp11.3 [CytoView hg19]  RBM10 - Xp11.3 [CytoView hg38]
ImmunoBaseENSG00000182872
Genome Data Viewer NCBIRBM10 [Mapview hg19]  
OMIM300080   311900   
Gene and transcription
Genbank (Entrez)AK000962 AK024839 AK025854 AK098115 AK225175
RefSeq transcript (Entrez)NM_001204466 NM_001204467 NM_001204468 NM_005676 NM_152856
Consensus coding sequences : CCDS (NCBI)RBM10
Gene ExpressionRBM10 [ NCBI-GEO ]   RBM10 [ EBI - ARRAY_EXPRESS ]   RBM10 [ SEEK ]   RBM10 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM10 [ Firebrowse - Broad ]
GenevisibleExpression of RBM10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8241
GTEX Portal (Tissue expression)RBM10
Human Protein AtlasENSG00000182872-RBM10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98175   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98175  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98175
PhosPhoSitePlusP98175
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    RRM (PS50102)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)G_patch_dom    Nucleotide-bd_a/b_plait_sf    OCRE    RBD_domain_sf    RBM10    RBM10_OCRE    RBM10_RRM2    RRM_dom    Znf_C2H2_type    Znf_RanBP2    Znf_RanBP2_sf   
Domain families : Pfam (Sanger)G-patch (PF01585)    OCRE (PF17780)    RRM_1 (PF00076)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam01585    pfam17780    pfam00076    pfam00641   
Domain families : Smart (EMBL)G_patch (SM00443)  RRM (SM00360)  ZnF_RBZ (SM00547)  
Conserved Domain (NCBI)RBM10
PDB (RSDB)2LXI    2M2B    2MXV    2MXW    5ZSW    5ZSY   
PDB Europe2LXI    2M2B    2MXV    2MXW    5ZSW    5ZSY   
PDB (PDBSum)2LXI    2M2B    2MXV    2MXW    5ZSW    5ZSY   
PDB (IMB)2LXI    2M2B    2MXV    2MXW    5ZSW    5ZSY   
Structural Biology KnowledgeBase2LXI    2M2B    2MXV    2MXW    5ZSW    5ZSY   
SCOP (Structural Classification of Proteins)2LXI    2M2B    2MXV    2MXW    5ZSW    5ZSY   
CATH (Classification of proteins structures)2LXI    2M2B    2MXV    2MXW    5ZSW    5ZSY   
SuperfamilyP98175
AlphaFold pdb e-kbP98175   
Human Protein Atlas [tissue]ENSG00000182872-RBM10 [tissue]
HPRD02095
Protein Interaction databases
DIP (DOE-UCLA)P98175
IntAct (EBI)P98175
BioGRIDRBM10
STRING (EMBL)RBM10
ZODIACRBM10
Ontologies - Pathways
QuickGOP98175
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleus  nucleus  biological_process  negative regulation of cell population proliferation  nuclear speck  protein-containing complex  positive regulation of smooth muscle cell apoptotic process  miRNA binding  identical protein binding  metal ion binding  negative regulation of mRNA splicing, via spliceosome  3'-UTR-mediated mRNA stabilization  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleus  nucleus  biological_process  negative regulation of cell population proliferation  nuclear speck  protein-containing complex  positive regulation of smooth muscle cell apoptotic process  miRNA binding  identical protein binding  metal ion binding  negative regulation of mRNA splicing, via spliceosome  3'-UTR-mediated mRNA stabilization  
NDEx NetworkRBM10
Atlas of Cancer Signalling NetworkRBM10
Wikipedia pathwaysRBM10
Orthology - Evolution
OrthoDB8241
GeneTree (enSembl)ENSG00000182872
Phylogenetic Trees/Animal Genes : TreeFamRBM10
Homologs : HomoloGeneRBM10
Homology/Alignments : Family Browser (UCSC)RBM10
Gene fusions - Rearrangements
Fusion : MitelmanRBM10/CMAS [Xp11.23/12p12.1]  
Fusion : MitelmanRBM10/JADE3 [Xp11.23/Xp11.23]  
Fusion : QuiverRBM10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM10
dbVarRBM10
ClinVarRBM10
MonarchRBM10
1000_GenomesRBM10 
Exome Variant ServerRBM10
GNOMAD BrowserENSG00000182872
Varsome BrowserRBM10
ACMGRBM10 variants
VarityP98175
Genomic Variants (DGV)RBM10 [DGVbeta]
DECIPHERRBM10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM10 
Mutations
ICGC Data PortalRBM10 
TCGA Data PortalRBM10 
Broad Tumor PortalRBM10
OASIS PortalRBM10 [ Somatic mutations - Copy number]
Cancer Gene: CensusRBM10 
Somatic Mutations in Cancer : COSMICRBM10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBM10
Mutations and Diseases : HGMDRBM10
intOGen PortalRBM10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBM10
DgiDB (Drug Gene Interaction Database)RBM10
DoCM (Curated mutations)RBM10
CIViC (Clinical Interpretations of Variants in Cancer)RBM10
Cancer3DRBM10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300080    311900   
Orphanet2614   
DisGeNETRBM10
MedgenRBM10
Genetic Testing Registry RBM10
NextProtP98175 [Medical]
GENETestsRBM10
Target ValidationRBM10
Huge Navigator RBM10 [HugePedia]
ClinGenRBM10
Clinical trials, drugs, therapy
MyCancerGenomeRBM10
Protein Interactions : CTDRBM10
Pharm GKB GenePA34259
PharosP98175
Clinical trialRBM10
Miscellaneous
canSAR (ICR)RBM10
HarmonizomeRBM10
DataMed IndexRBM10
Probes
Litterature
PubMed134 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:26 CEST 2021

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