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RBM10 (RNA binding motif protein 10)

Identity

Other namesDXS8237E
GPATC9
GPATCH9
S1-1
TARPS
ZRANB5
HGNC (Hugo) RBM10
LocusID (NCBI) 8241
Location Xp11.23
Location_base_pair Starts at 47004617 and ends at 47046214 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RBM10   9896
Cards
Entrez_Gene (NCBI)RBM10  8241  RNA binding motif protein 10
GeneCards (Weizmann)RBM10
Ensembl (Hinxton)ENSG00000182872 [Gene_View]  chrX:47004617-47046214 [Contig_View]  RBM10 [Vega]
ICGC DataPortalENSG00000182872
cBioPortalRBM10
AceView (NCBI)RBM10
Genatlas (Paris)RBM10
WikiGenes8241
SOURCE (Princeton)NM_001204466 NM_001204467 NM_001204468 NM_005676 NM_152856
Genomic and cartography
GoldenPath (UCSC)RBM10  -  Xp11.23   chrX:47004617-47046214 +  Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblRBM10 - Xp11.23 [CytoView]
Mapping of homologs : NCBIRBM10 [Mapview]
OMIM300080   311900   
Gene and transcription
Genbank (Entrez)AK000962 AK024839 AK025854 AK098115 AK225175
RefSeq transcript (Entrez)NM_001204466 NM_001204467 NM_001204468 NM_005676 NM_152856
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_012548 NT_079573 NW_001842362 NW_004929439
Consensus coding sequences : CCDS (NCBI)RBM10
Cluster EST : UnigeneHs.401509 [ NCBI ]
CGAP (NCI)Hs.401509
Alternative Splicing : Fast-db (Paris)GSHG0031489
Alternative Splicing GalleryENSG00000182872
Gene ExpressionRBM10 [ NCBI-GEO ]     RBM10 [ SEEK ]   RBM10 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98175 (Uniprot)
NextProtP98175  [Medical]
With graphics : InterProP98175
Splice isoforms : SwissVarP98175 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    RRM (PS50102)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)G_patch_dom [organisation]   Nucleotide-bd_a/b_plait [organisation]   RRM_dom [organisation]   Znf_C2H2 [organisation]   Znf_C2H2-like [organisation]   Znf_RanBP2 [organisation]  
Related proteins : CluSTrP98175
Domain families : Pfam (Sanger)G-patch (PF01585)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam01585    pfam00641   
Domain families : Smart (EMBL)G_patch (SM00443)  RRM (SM00360)  ZnF_C2H2 (SM00355)  ZnF_RBZ (SM00547)  
DMDM Disease mutations8241
Blocks (Seattle)P98175
PDB (SRS)2LXI    2M2B   
PDB (PDBSum)2LXI    2M2B   
PDB (IMB)2LXI    2M2B   
PDB (RSDB)2LXI    2M2B   
Human Protein AtlasENSG00000182872 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP98175
HPRD02095
IPIIPI00375731   IPI00915253   IPI00549342   IPI00916428   IPI01008793   
Protein Interaction databases
DIP (DOE-UCLA)P98175
IntAct (EBI)P98175
FunCoupENSG00000182872
BioGRIDRBM10
InParanoidP98175
Interologous Interaction database P98175
IntegromeDBRBM10
STRING (EMBL)RBM10
Ontologies - Pathways
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleotide binding  protein binding  nucleus  nucleolus  mRNA processing  biological_process  zinc ion binding  negative regulation of cell proliferation  RNA splicing  protein complex binding  positive regulation of smooth muscle cell apoptotic process  identical protein binding  poly(A) RNA binding  3'-UTR-mediated mRNA stabilization  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleotide binding  protein binding  nucleus  nucleolus  mRNA processing  biological_process  zinc ion binding  negative regulation of cell proliferation  RNA splicing  protein complex binding  positive regulation of smooth muscle cell apoptotic process  identical protein binding  poly(A) RNA binding  3'-UTR-mediated mRNA stabilization  
Protein Interaction DatabaseRBM10
Wikipedia pathwaysRBM10
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RBM10
snp3D : Map Gene to Disease8241
SNP (GeneSNP Utah)RBM10
SNP : HGBaseRBM10
Genetic variants : HAPMAPRBM10
Exome VariantRBM10
1000_GenomesRBM10 
ICGC programENSG00000182872 
Somatic Mutations in Cancer : COSMICRBM10 
CONAN: Copy Number AnalysisRBM10 
Mutations and Diseases : HGMDRBM10
Mutations and Diseases : intOGenRBM10
Genomic VariantsRBM10  RBM10 [DGVbeta]
dbVarRBM10
ClinVarRBM10
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM300080    311900   
MedgenRBM10
GENETestsRBM10
Disease Genetic AssociationRBM10
Huge Navigator RBM10 [HugePedia]  RBM10 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRBM10
Homology/Alignments : Family Browser (UCSC)RBM10
Phylogenetic Trees/Animal Genes : TreeFamRBM10
Chemical/Protein Interactions : CTD8241
Chemical/Pharm GKB GenePA34259
Clinical trialRBM10
Cancer Resource (Charite)ENSG00000182872
Other databases
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
CoreMineRBM10
iHOPRBM10
OncoSearchRBM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:02:34 CEST 2014

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