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RBM11 (RNA binding motif protein 11)

Identity

Other alias-
HGNC (Hugo) RBM11
LocusID (NCBI) 54033
Atlas_Id 72509
Location 21q11.2  [Link to chromosome band 21q11]
Location_base_pair Starts at 15588466 and ends at 15600693 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CEP95 (17q23.3) / RBM11 (21q11.2)RBM11 (21q11.2) / RBM11 (21q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM11   9897
Cards
Entrez_Gene (NCBI)RBM11  54033  RNA binding motif protein 11
Aliases
GeneCards (Weizmann)RBM11
Ensembl hg19 (Hinxton)ENSG00000185272 [Gene_View]  chr21:15588466-15600693 [Contig_View]  RBM11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185272 [Gene_View]  chr21:15588466-15600693 [Contig_View]  RBM11 [Vega]
ICGC DataPortalENSG00000185272
TCGA cBioPortalRBM11
AceView (NCBI)RBM11
Genatlas (Paris)RBM11
WikiGenes54033
SOURCE (Princeton)RBM11
Genetics Home Reference (NIH)RBM11
Genomic and cartography
GoldenPath hg19 (UCSC)RBM11  -     chr21:15588466-15600693 +  21q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM11  -     21q11.2   [Description]    (hg38-Dec_2013)
EnsemblRBM11 - 21q11.2 [CytoView hg19]  RBM11 - 21q11.2 [CytoView hg38]
Mapping of homologs : NCBIRBM11 [Mapview hg19]  RBM11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF519623 AK091331 AY077695 BC030196 BQ186146
RefSeq transcript (Entrez)NM_144770
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)RBM11
Cluster EST : UnigeneHs.283828 [ NCBI ]
CGAP (NCI)Hs.283828
Alternative Splicing GalleryENSG00000185272
Gene ExpressionRBM11 [ NCBI-GEO ]   RBM11 [ EBI - ARRAY_EXPRESS ]   RBM11 [ SEEK ]   RBM11 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54033
GTEX Portal (Tissue expression)RBM11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57052   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57052  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57052
Splice isoforms : SwissVarP57052
PhosPhoSitePlusP57052
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM11
DMDM Disease mutations54033
Blocks (Seattle)RBM11
PDB (SRS)2YWK   
PDB (PDBSum)2YWK   
PDB (IMB)2YWK   
PDB (RSDB)2YWK   
Structural Biology KnowledgeBase2YWK   
SCOP (Structural Classification of Proteins)2YWK   
CATH (Classification of proteins structures)2YWK   
SuperfamilyP57052
Human Protein AtlasENSG00000185272
Peptide AtlasP57052
HPRD10185
IPIIPI00855847   IPI00025663   
Protein Interaction databases
DIP (DOE-UCLA)P57052
IntAct (EBI)P57052
FunCoupENSG00000185272
BioGRIDRBM11
STRING (EMBL)RBM11
ZODIACRBM11
Ontologies - Pathways
QuickGOP57052
Ontology : AmiGOnucleotide binding  regulation of alternative mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  mRNA processing  multicellular organismal development  poly(U) RNA binding  RNA splicing  nuclear speck  cell differentiation  cellular response to oxidative stress  protein homodimerization activity  
Ontology : EGO-EBInucleotide binding  regulation of alternative mRNA splicing, via spliceosome  protein binding  nucleus  nucleoplasm  mRNA processing  multicellular organismal development  poly(U) RNA binding  RNA splicing  nuclear speck  cell differentiation  cellular response to oxidative stress  protein homodimerization activity  
NDEx NetworkRBM11
Atlas of Cancer Signalling NetworkRBM11
Wikipedia pathwaysRBM11
Orthology - Evolution
OrthoDB54033
GeneTree (enSembl)ENSG00000185272
Phylogenetic Trees/Animal Genes : TreeFamRBM11
HOVERGENP57052
HOGENOMP57052
Homologs : HomoloGeneRBM11
Homology/Alignments : Family Browser (UCSC)RBM11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM11
dbVarRBM11
ClinVarRBM11
1000_GenomesRBM11 
Exome Variant ServerRBM11
ExAC (Exome Aggregation Consortium)RBM11 (select the gene name)
Genetic variants : HAPMAP54033
Genomic Variants (DGV)RBM11 [DGVbeta]
DECIPHER (Syndromes)21:15588466-15600693  ENSG00000185272
CONAN: Copy Number AnalysisRBM11 
Mutations
ICGC Data PortalRBM11 
TCGA Data PortalRBM11 
Broad Tumor PortalRBM11
OASIS PortalRBM11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM11
DgiDB (Drug Gene Interaction Database)RBM11
DoCM (Curated mutations)RBM11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM11 (select a term)
intoGenRBM11
Cancer3DRBM11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM11
Genetic Testing Registry RBM11
NextProtP57052 [Medical]
TSGene54033
GENETestsRBM11
Huge Navigator RBM11 [HugePedia]
snp3D : Map Gene to Disease54033
BioCentury BCIQRBM11
ClinGenRBM11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54033
Chemical/Pharm GKB GenePA34260
Clinical trialRBM11
Miscellaneous
canSAR (ICR)RBM11 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM11
EVEXRBM11
GoPubMedRBM11
iHOPRBM11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:37 CET 2017

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