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RBM12 (RNA binding motif protein 12)

Identity

Alias_symbol (synonym)HRIHFB2091
KIAA0765
SWAN
Other alias
HGNC (Hugo) RBM12
LocusID (NCBI) 10137
Atlas_Id 72510
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 35648925 and ends at 35664956 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RBM12 (20q11.22) / PI3 (20q13.12)RBM12 (20q11.22) / RP11-123B3.6 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM12   9898
Cards
Entrez_Gene (NCBI)RBM12  10137  RNA binding motif protein 12
AliasesHRIHFB2091; SWAN
GeneCards (Weizmann)RBM12
Ensembl hg19 (Hinxton)ENSG00000244462 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244462 [Gene_View]  chr20:35648925-35664956 [Contig_View]  RBM12 [Vega]
ICGC DataPortalENSG00000244462
TCGA cBioPortalRBM12
AceView (NCBI)RBM12
Genatlas (Paris)RBM12
WikiGenes10137
SOURCE (Princeton)RBM12
Genetics Home Reference (NIH)RBM12
Genomic and cartography
GoldenPath hg38 (UCSC)RBM12  -     chr20:35648925-35664956 -  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM12  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblRBM12 - 20q11.22 [CytoView hg19]  RBM12 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIRBM12 [Mapview hg19]  RBM12 [Mapview hg38]
OMIM607179   
Gene and transcription
Genbank (Entrez)AA481034 AA825305 AB015336 AB018308 AF345332
RefSeq transcript (Entrez)NM_001198838 NM_001198840 NM_006047 NM_152838
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM12
Cluster EST : UnigeneHs.700188 [ NCBI ]
CGAP (NCI)Hs.700188
Alternative Splicing GalleryENSG00000244462
Gene ExpressionRBM12 [ NCBI-GEO ]   RBM12 [ EBI - ARRAY_EXPRESS ]   RBM12 [ SEEK ]   RBM12 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10137
GTEX Portal (Tissue expression)RBM12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTZ6
Splice isoforms : SwissVarQ9NTZ6
PhosPhoSitePlusQ9NTZ6
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM12
DMDM Disease mutations10137
Blocks (Seattle)RBM12
PDB (SRS)1WEL    2CPY    2DNN    2EK1    2EK6   
PDB (PDBSum)1WEL    2CPY    2DNN    2EK1    2EK6   
PDB (IMB)1WEL    2CPY    2DNN    2EK1    2EK6   
PDB (RSDB)1WEL    2CPY    2DNN    2EK1    2EK6   
Structural Biology KnowledgeBase1WEL    2CPY    2DNN    2EK1    2EK6   
SCOP (Structural Classification of Proteins)1WEL    2CPY    2DNN    2EK1    2EK6   
CATH (Classification of proteins structures)1WEL    2CPY    2DNN    2EK1    2EK6   
SuperfamilyQ9NTZ6
Human Protein AtlasENSG00000244462
Peptide AtlasQ9NTZ6
HPRD06212
IPIIPI00550308   IPI01010145   IPI00644692   IPI00852629   IPI00852859   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTZ6
IntAct (EBI)Q9NTZ6
FunCoupENSG00000244462
BioGRIDRBM12
STRING (EMBL)RBM12
ZODIACRBM12
Ontologies - Pathways
QuickGOQ9NTZ6
Ontology : AmiGORNA binding  protein binding  nucleoplasm  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  
NDEx NetworkRBM12
Atlas of Cancer Signalling NetworkRBM12
Wikipedia pathwaysRBM12
Orthology - Evolution
OrthoDB10137
GeneTree (enSembl)ENSG00000244462
Phylogenetic Trees/Animal Genes : TreeFamRBM12
HOVERGENQ9NTZ6
HOGENOMQ9NTZ6
Homologs : HomoloGeneRBM12
Homology/Alignments : Family Browser (UCSC)RBM12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM12
dbVarRBM12
ClinVarRBM12
1000_GenomesRBM12 
Exome Variant ServerRBM12
ExAC (Exome Aggregation Consortium)RBM12 (select the gene name)
Genetic variants : HAPMAP10137
Genomic Variants (DGV)RBM12 [DGVbeta]
DECIPHERRBM12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM12 
Mutations
ICGC Data PortalRBM12 
TCGA Data PortalRBM12 
Broad Tumor PortalRBM12
OASIS PortalRBM12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM12
DgiDB (Drug Gene Interaction Database)RBM12
DoCM (Curated mutations)RBM12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM12 (select a term)
intoGenRBM12
Cancer3DRBM12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607179   
Orphanet
MedgenRBM12
Genetic Testing Registry RBM12
NextProtQ9NTZ6 [Medical]
TSGene10137
GENETestsRBM12
Target ValidationRBM12
Huge Navigator RBM12 [HugePedia]
snp3D : Map Gene to Disease10137
BioCentury BCIQRBM12
ClinGenRBM12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10137
Chemical/Pharm GKB GenePA34261
Clinical trialRBM12
Miscellaneous
canSAR (ICR)RBM12 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM12
EVEXRBM12
GoPubMedRBM12
iHOPRBM12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:54 CEST 2017

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