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RBM12B-AS1 (RBM12B antisense RNA 1)

Identity

Alias_namesC8orf39
chromosome 8 open reading frame 39
RBM12B antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)PRO1905
Other alias
HGNC (Hugo) RBM12B-AS1
LocusID (NCBI) 55472
Atlas_Id 72512
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 93740121 and ends at 93740773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM12B-AS1   28818
Cards
Entrez_Gene (NCBI)RBM12B-AS1  55472  RBM12B antisense RNA 1
AliasesC8orf39; PRO1905
GeneCards (Weizmann)RBM12B-AS1
Ensembl hg19 (Hinxton)ENSG00000279331 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279331 [Gene_View]  chr8:93740121-93740773 [Contig_View]  RBM12B-AS1 [Vega]
ICGC DataPortalENSG00000279331
TCGA cBioPortalRBM12B-AS1
AceView (NCBI)RBM12B-AS1
Genatlas (Paris)RBM12B-AS1
WikiGenes55472
SOURCE (Princeton)RBM12B-AS1
Genetics Home Reference (NIH)RBM12B-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)RBM12B-AS1  -     chr8:93740121-93740773 +  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM12B-AS1  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblRBM12B-AS1 - 8q22.1 [CytoView hg19]  RBM12B-AS1 - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBIRBM12B-AS1 [Mapview hg19]  RBM12B-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF116672
RefSeq transcript (Entrez)NM_018608
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM12B-AS1
Cluster EST : UnigeneHs.192788 [ NCBI ]
CGAP (NCI)Hs.192788
Alternative Splicing GalleryENSG00000279331
Gene ExpressionRBM12B-AS1 [ NCBI-GEO ]   RBM12B-AS1 [ EBI - ARRAY_EXPRESS ]   RBM12B-AS1 [ SEEK ]   RBM12B-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM12B-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55472
GTEX Portal (Tissue expression)RBM12B-AS1
Human Protein AtlasENSG00000279331-RBM12B-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1G2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1G2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1G2
Splice isoforms : SwissVarQ9P1G2
PhosPhoSitePlusQ9P1G2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RBM12B-AS1
DMDM Disease mutations55472
Blocks (Seattle)RBM12B-AS1
SuperfamilyQ9P1G2
Human Protein Atlas [tissue]ENSG00000279331-RBM12B-AS1 [tissue]
Peptide AtlasQ9P1G2
IPIIPI00032196   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1G2
IntAct (EBI)Q9P1G2
FunCoupENSG00000279331
BioGRIDRBM12B-AS1
STRING (EMBL)RBM12B-AS1
ZODIACRBM12B-AS1
Ontologies - Pathways
QuickGOQ9P1G2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRBM12B-AS1
Atlas of Cancer Signalling NetworkRBM12B-AS1
Wikipedia pathwaysRBM12B-AS1
Orthology - Evolution
OrthoDB55472
GeneTree (enSembl)ENSG00000279331
Phylogenetic Trees/Animal Genes : TreeFamRBM12B-AS1
HOVERGENQ9P1G2
HOGENOMQ9P1G2
Homologs : HomoloGeneRBM12B-AS1
Homology/Alignments : Family Browser (UCSC)RBM12B-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalRBM12B-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM12B-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM12B-AS1
dbVarRBM12B-AS1
ClinVarRBM12B-AS1
1000_GenomesRBM12B-AS1 
Exome Variant ServerRBM12B-AS1
ExAC (Exome Aggregation Consortium)ENSG00000279331
GNOMAD BrowserENSG00000279331
Genetic variants : HAPMAP55472
Genomic Variants (DGV)RBM12B-AS1 [DGVbeta]
DECIPHERRBM12B-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM12B-AS1 
Mutations
ICGC Data PortalRBM12B-AS1 
TCGA Data PortalRBM12B-AS1 
Broad Tumor PortalRBM12B-AS1
OASIS PortalRBM12B-AS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM12B-AS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM12B-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM12B-AS1
DgiDB (Drug Gene Interaction Database)RBM12B-AS1
DoCM (Curated mutations)RBM12B-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM12B-AS1 (select a term)
intoGenRBM12B-AS1
Cancer3DRBM12B-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBM12B-AS1
MedgenRBM12B-AS1
Genetic Testing Registry RBM12B-AS1
NextProtQ9P1G2 [Medical]
TSGene55472
GENETestsRBM12B-AS1
Target ValidationRBM12B-AS1
Huge Navigator RBM12B-AS1 [HugePedia]
snp3D : Map Gene to Disease55472
BioCentury BCIQRBM12B-AS1
ClinGenRBM12B-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55472
Chemical/Pharm GKB GenePA142672358
Clinical trialRBM12B-AS1
Miscellaneous
canSAR (ICR)RBM12B-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM12B-AS1
EVEXRBM12B-AS1
GoPubMedRBM12B-AS1
iHOPRBM12B-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:18:52 CET 2017

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