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RBM12B (RNA binding motif protein 12B)

Identity

Other aliasMGC:33837
HGNC (Hugo) RBM12B
LocusID (NCBI) 389677
Atlas_Id 72511
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 93731501 and ends at 93740996 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RBM12B (8q22.1) / GPRC5B (16p12.3)RBM12B (8q22.1) / RSPO2 (8q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM12B   32310
Cards
Entrez_Gene (NCBI)RBM12B  389677  RNA binding motif protein 12B
AliasesMGC:33837
GeneCards (Weizmann)RBM12B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:93731501-93740996 [Contig_View]  RBM12B [Vega]
TCGA cBioPortalRBM12B
AceView (NCBI)RBM12B
Genatlas (Paris)RBM12B
WikiGenes389677
SOURCE (Princeton)RBM12B
Genetics Home Reference (NIH)RBM12B
Genomic and cartography
GoldenPath hg38 (UCSC)RBM12B  -     chr8:93731501-93740996 -  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM12B  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblRBM12B - 8q22.1 [CytoView hg19]  RBM12B - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBIRBM12B [Mapview hg19]  RBM12B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039260
RefSeq transcript (Entrez)NM_203390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM12B
Cluster EST : UnigeneHs.606916 [ NCBI ]
CGAP (NCI)Hs.606916
Gene ExpressionRBM12B [ NCBI-GEO ]   RBM12B [ EBI - ARRAY_EXPRESS ]   RBM12B [ SEEK ]   RBM12B [ MEM ]
Gene Expression Viewer (FireBrowse)RBM12B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389677
GTEX Portal (Tissue expression)RBM12B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXT5
Splice isoforms : SwissVarQ8IXT5
PhosPhoSitePlusQ8IXT5
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM12B
DMDM Disease mutations389677
Blocks (Seattle)RBM12B
SuperfamilyQ8IXT5
Peptide AtlasQ8IXT5
HPRD14213
IPIIPI00871780   IPI00217626   IPI00981453   IPI00982018   IPI00982580   IPI00980861   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXT5
IntAct (EBI)Q8IXT5
BioGRIDRBM12B
STRING (EMBL)RBM12B
ZODIACRBM12B
Ontologies - Pathways
QuickGOQ8IXT5
Ontology : AmiGORNA binding  protein binding  
Ontology : EGO-EBIRNA binding  protein binding  
NDEx NetworkRBM12B
Atlas of Cancer Signalling NetworkRBM12B
Wikipedia pathwaysRBM12B
Orthology - Evolution
OrthoDB389677
Phylogenetic Trees/Animal Genes : TreeFamRBM12B
HOVERGENQ8IXT5
HOGENOMQ8IXT5
Homologs : HomoloGeneRBM12B
Homology/Alignments : Family Browser (UCSC)RBM12B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM12B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM12B
dbVarRBM12B
ClinVarRBM12B
1000_GenomesRBM12B 
Exome Variant ServerRBM12B
ExAC (Exome Aggregation Consortium)RBM12B (select the gene name)
Genetic variants : HAPMAP389677
Genomic Variants (DGV)RBM12B [DGVbeta]
DECIPHERRBM12B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM12B 
Mutations
ICGC Data PortalRBM12B 
TCGA Data PortalRBM12B 
Broad Tumor PortalRBM12B
OASIS PortalRBM12B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM12B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM12B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM12B
DgiDB (Drug Gene Interaction Database)RBM12B
DoCM (Curated mutations)RBM12B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM12B (select a term)
intoGenRBM12B
Cancer3DRBM12B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM12B
Genetic Testing Registry RBM12B
NextProtQ8IXT5 [Medical]
TSGene389677
GENETestsRBM12B
Target ValidationRBM12B
Huge Navigator RBM12B [HugePedia]
snp3D : Map Gene to Disease389677
BioCentury BCIQRBM12B
ClinGenRBM12B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389677
Chemical/Pharm GKB GenePA142671098
Clinical trialRBM12B
Miscellaneous
canSAR (ICR)RBM12B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM12B
EVEXRBM12B
GoPubMedRBM12B
iHOPRBM12B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:54 CEST 2017

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