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RBM14 (RNA binding motif protein 14)

Identity

Alias (NCBI)COAA
PSP2
SIP
SYTIP1
TMEM137
HGNC (Hugo) RBM14
HGNC Alias symbSIP
SYTIP1
COAA
DKFZp779J0927
HGNC Alias namecoactivator activator
 SYT interacting protein
LocusID (NCBI) 10432
Atlas_Id 42068
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66616630 and ends at 66629926 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf80 (11q13.2) / RBM14 (11q13.2)CHGA (14q32.12) / RBM14 (11q13.2)RBM14 (11q13.2) / CCS (11q13.2)
RBM14 (11q13.2) / FGF3 (11q13.3)RBM14 (11q13.2) / MERTK (2q13)RBM14 (11q13.2) / PACS1 (11q13.1)
RBM14 (11q13.2) / RBM14 (11q13.2)RBM14 (11q13.2) / RBM4 (11q13.2)RBM14 (11q13.2) / RBM4B (11q13.2)
RBM14 (11q13.2) / SLC27A2 (15q21.2)SEPW1 (19q13.33) / RBM14 (11q13.2)TMCO3 (13q34) / RBM14 (11q13.2)
RBM14 11q13.2 / PACS1 11q13.1C11orf80 11q13.2 / RBM14 11q13.2RBM14 11q13.2 / CCS 11q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)RBM14   14219
Cards
Entrez_Gene (NCBI)RBM14    RNA binding motif protein 14
AliasesCOAA; PSP2; SIP; SYTIP1; 
TMEM137
GeneCards (Weizmann)RBM14
Ensembl hg19 (Hinxton)ENSG00000239306 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239306 [Gene_View]  ENSG00000239306 [Sequence]  chr11:66616630-66629926 [Contig_View]  RBM14 [Vega]
ICGC DataPortalENSG00000239306
TCGA cBioPortalRBM14
AceView (NCBI)RBM14
Genatlas (Paris)RBM14
SOURCE (Princeton)RBM14
Genetics Home Reference (NIH)RBM14
Genomic and cartography
GoldenPath hg38 (UCSC)RBM14  -     chr11:66616630-66629926 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM14  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathRBM14 - 11q13.2 [CytoView hg19]  RBM14 - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000239306
Genome Data Viewer NCBIRBM14 [Mapview hg19]  
OMIM612409   
Gene and transcription
Genbank (Entrez)AB209007 AF080561 AF315632 AF315633 AK021768
RefSeq transcript (Entrez)NM_001198836 NM_001198837 NM_006328 NM_032886
Consensus coding sequences : CCDS (NCBI)RBM14
Gene ExpressionRBM14 [ NCBI-GEO ]   RBM14 [ EBI - ARRAY_EXPRESS ]   RBM14 [ SEEK ]   RBM14 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM14 [ Firebrowse - Broad ]
GenevisibleExpression of RBM14 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10432
GTEX Portal (Tissue expression)RBM14
Human Protein AtlasENSG00000239306-RBM14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PK6
PhosPhoSitePlusQ96PK6
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RBM14_RRM1    RBM14_RRM2    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM14
PDB (RSDB)2DNP   
PDB Europe2DNP   
PDB (PDBSum)2DNP   
PDB (IMB)2DNP   
Structural Biology KnowledgeBase2DNP   
SCOP (Structural Classification of Proteins)2DNP   
CATH (Classification of proteins structures)2DNP   
SuperfamilyQ96PK6
AlphaFold pdb e-kbQ96PK6   
Human Protein Atlas [tissue]ENSG00000239306-RBM14 [tissue]
HPRD11485
Protein Interaction databases
DIP (DOE-UCLA)Q96PK6
IntAct (EBI)Q96PK6
BioGRIDRBM14
STRING (EMBL)RBM14
ZODIACRBM14
Ontologies - Pathways
QuickGOQ96PK6
Ontology : AmiGOmRNA splicing, via spliceosome  activation of innate immune response  RNA binding  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  transcription regulator complex  nucleolus  cytoplasm  response to hormone  histone deacetylation  nuclear speck  nuclear speck  nuclear receptor coactivator activity  innate immune response  positive regulation of transcription by RNA polymerase II  negative regulation of centriole replication  SMAD protein signal transduction  centriole assembly  ribonucleoprotein complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  activation of innate immune response  RNA binding  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  transcription regulator complex  nucleolus  cytoplasm  response to hormone  histone deacetylation  nuclear speck  nuclear speck  nuclear receptor coactivator activity  innate immune response  positive regulation of transcription by RNA polymerase II  negative regulation of centriole replication  SMAD protein signal transduction  centriole assembly  ribonucleoprotein complex  
NDEx NetworkRBM14
Atlas of Cancer Signalling NetworkRBM14
Wikipedia pathwaysRBM14
Orthology - Evolution
OrthoDB10432
GeneTree (enSembl)ENSG00000239306
Phylogenetic Trees/Animal Genes : TreeFamRBM14
Homologs : HomoloGeneRBM14
Homology/Alignments : Family Browser (UCSC)RBM14
Gene fusions - Rearrangements
Fusion : MitelmanC11orf80/RBM14 [11q13.2/11q13.2]  
Fusion : MitelmanRBM14/CCS [11q13.2/11q13.2]  
Fusion : MitelmanRBM14/FGF3 [11q13.2/11q13.3]  
Fusion : MitelmanRBM14/MERTK [11q13.2/2q13]  
Fusion : QuiverRBM14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM14
dbVarRBM14
ClinVarRBM14
MonarchRBM14
1000_GenomesRBM14 
Exome Variant ServerRBM14
GNOMAD BrowserENSG00000239306
Varsome BrowserRBM14
ACMGRBM14 variants
VarityQ96PK6
Genomic Variants (DGV)RBM14 [DGVbeta]
DECIPHERRBM14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM14 
Mutations
ICGC Data PortalRBM14 
TCGA Data PortalRBM14 
Broad Tumor PortalRBM14
OASIS PortalRBM14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM14  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBM14
Mutations and Diseases : HGMDRBM14
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBM14
DgiDB (Drug Gene Interaction Database)RBM14
DoCM (Curated mutations)RBM14
CIViC (Clinical Interpretations of Variants in Cancer)RBM14
Cancer3DRBM14
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612409   
Orphanet
DisGeNETRBM14
MedgenRBM14
Genetic Testing Registry RBM14
NextProtQ96PK6 [Medical]
GENETestsRBM14
Target ValidationRBM14
Huge Navigator RBM14 [HugePedia]
ClinGenRBM14
Clinical trials, drugs, therapy
MyCancerGenomeRBM14
Protein Interactions : CTDRBM14
Pharm GKB GenePA34263
PharosQ96PK6
Clinical trialRBM14
Miscellaneous
canSAR (ICR)RBM14
HarmonizomeRBM14
DataMed IndexRBM14
Probes
Litterature
PubMed141 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBM14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:26 CEST 2021
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