Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RBM15B (RNA binding motif protein 15B)

Identity

Alias_symbol (synonym)HUMAGCGB
OTT3
Other alias
HGNC (Hugo) RBM15B
LocusID (NCBI) 29890
Atlas_Id 72514
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 51428699 and ends at 51435336 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
H19 (11p15.5) / RBM15B (3p21.2)NPEPL1 (20q13.32) / RBM15B (3p21.2)RBM15B (3p21.2) / RBM15B (3p21.2)
RBM15B (3p21.2) / SPINK1 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM15B   24303
Cards
Entrez_Gene (NCBI)RBM15B  29890  RNA binding motif protein 15B
AliasesHUMAGCGB; OTT3
GeneCards (Weizmann)RBM15B
Ensembl hg19 (Hinxton)ENSG00000259956 [Gene_View]  chr3:51428699-51435336 [Contig_View]  RBM15B [Vega]
Ensembl hg38 (Hinxton)ENSG00000259956 [Gene_View]  chr3:51428699-51435336 [Contig_View]  RBM15B [Vega]
ICGC DataPortalENSG00000259956
TCGA cBioPortalRBM15B
AceView (NCBI)RBM15B
Genatlas (Paris)RBM15B
WikiGenes29890
SOURCE (Princeton)RBM15B
Genetics Home Reference (NIH)RBM15B
Genomic and cartography
GoldenPath hg19 (UCSC)RBM15B  -     chr3:51428699-51435336 +  3p21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM15B  -     3p21.2   [Description]    (hg38-Dec_2013)
EnsemblRBM15B - 3p21.2 [CytoView hg19]  RBM15B - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBIRBM15B [Mapview hg19]  RBM15B [Mapview hg38]
OMIM612602   
Gene and transcription
Genbank (Entrez)AA369886 AL831838 AY545557 BC001367 BC121184
RefSeq transcript (Entrez)NM_013286
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)RBM15B
Cluster EST : UnigeneHs.731737 [ NCBI ]
CGAP (NCI)Hs.731737
Alternative Splicing GalleryENSG00000259956
Gene ExpressionRBM15B [ NCBI-GEO ]   RBM15B [ EBI - ARRAY_EXPRESS ]   RBM15B [ SEEK ]   RBM15B [ MEM ]
Gene Expression Viewer (FireBrowse)RBM15B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29890
GTEX Portal (Tissue expression)RBM15B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDT2
Splice isoforms : SwissVarQ8NDT2
PhosPhoSitePlusQ8NDT2
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    SPOC (PS50917)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    SPOC_C    SPOC_like_C_dom    SPOC_met   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    SPOC (PF07744)   
Domain families : Pfam (NCBI)pfam00076    pfam07744   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM15B
DMDM Disease mutations29890
Blocks (Seattle)RBM15B
SuperfamilyQ8NDT2
Human Protein AtlasENSG00000259956
Peptide AtlasQ8NDT2
HPRD11486
IPIIPI00175136   IPI01018837   IPI01012147   IPI01010469   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDT2
IntAct (EBI)Q8NDT2
FunCoupENSG00000259956
BioGRIDRBM15B
STRING (EMBL)RBM15B
ZODIACRBM15B
Ontologies - Pathways
QuickGOQ8NDT2
Ontology : AmiGOnucleotide binding  regulation of alternative mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleolus  transcription, DNA-templated  mRNA processing  nucleocytoplasmic transport  RNA splicing  viral process  poly(A) RNA binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleotide binding  regulation of alternative mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleolus  transcription, DNA-templated  mRNA processing  nucleocytoplasmic transport  RNA splicing  viral process  poly(A) RNA binding  negative regulation of transcription, DNA-templated  
NDEx NetworkRBM15B
Atlas of Cancer Signalling NetworkRBM15B
Wikipedia pathwaysRBM15B
Orthology - Evolution
OrthoDB29890
GeneTree (enSembl)ENSG00000259956
Phylogenetic Trees/Animal Genes : TreeFamRBM15B
HOVERGENQ8NDT2
HOGENOMQ8NDT2
Homologs : HomoloGeneRBM15B
Homology/Alignments : Family Browser (UCSC)RBM15B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM15B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM15B
dbVarRBM15B
ClinVarRBM15B
1000_GenomesRBM15B 
Exome Variant ServerRBM15B
ExAC (Exome Aggregation Consortium)RBM15B (select the gene name)
Genetic variants : HAPMAP29890
Genomic Variants (DGV)RBM15B [DGVbeta]
DECIPHER (Syndromes)3:51428699-51435336  ENSG00000259956
CONAN: Copy Number AnalysisRBM15B 
Mutations
ICGC Data PortalRBM15B 
TCGA Data PortalRBM15B 
Broad Tumor PortalRBM15B
OASIS PortalRBM15B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM15B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM15B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM15B
DgiDB (Drug Gene Interaction Database)RBM15B
DoCM (Curated mutations)RBM15B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM15B (select a term)
intoGenRBM15B
Cancer3DRBM15B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612602   
Orphanet
MedgenRBM15B
Genetic Testing Registry RBM15B
NextProtQ8NDT2 [Medical]
TSGene29890
GENETestsRBM15B
Huge Navigator RBM15B [HugePedia]
snp3D : Map Gene to Disease29890
BioCentury BCIQRBM15B
ClinGenRBM15B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29890
Chemical/Pharm GKB GenePA134870079
Clinical trialRBM15B
Miscellaneous
canSAR (ICR)RBM15B (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM15B
EVEXRBM15B
GoPubMedRBM15B
iHOPRBM15B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:38 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.