Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RBM17 (RNA binding motif protein 17)

Identity

Alias_symbol (synonym)SPF45
MGC14439
Other alias
HGNC (Hugo) RBM17
LocusID (NCBI) 84991
Atlas_Id 46514
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 6089346 and ends at 6117459 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RBM17 (10p15.1) / FSIP2 (2q32.1)RBM17 (10p15.1) / TOP2A (17q21.2)RBM17 (10p15.1) / TWSG1 (18p11.22)
RBM17 (10p15.1) / ZNF541 (19q13.33)RBM17 10p15.1 / TWSG1 18p11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM17   16944
Cards
Entrez_Gene (NCBI)RBM17  84991  RNA binding motif protein 17
AliasesSPF45
GeneCards (Weizmann)RBM17
Ensembl hg19 (Hinxton)ENSG00000134453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134453 [Gene_View]  chr10:6089346-6117459 [Contig_View]  RBM17 [Vega]
ICGC DataPortalENSG00000134453
TCGA cBioPortalRBM17
AceView (NCBI)RBM17
Genatlas (Paris)RBM17
WikiGenes84991
SOURCE (Princeton)RBM17
Genetics Home Reference (NIH)RBM17
Genomic and cartography
GoldenPath hg38 (UCSC)RBM17  -     chr10:6089346-6117459 +  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM17  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblRBM17 - 10p15.1 [CytoView hg19]  RBM17 - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBIRBM17 [Mapview hg19]  RBM17 [Mapview hg38]
OMIM606935   
Gene and transcription
Genbank (Entrez)AA905075 AF542550 AK021863 AK314952 BC007871
RefSeq transcript (Entrez)NM_001145547 NM_032905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM17
Cluster EST : UnigeneHs.498548 [ NCBI ]
CGAP (NCI)Hs.498548
Alternative Splicing GalleryENSG00000134453
Gene ExpressionRBM17 [ NCBI-GEO ]   RBM17 [ EBI - ARRAY_EXPRESS ]   RBM17 [ SEEK ]   RBM17 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84991
GTEX Portal (Tissue expression)RBM17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I25
Splice isoforms : SwissVarQ96I25
PhosPhoSitePlusQ96I25
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom    Nucleotide-bd_a/b_plait    RRM_dom    RRM_dom_euk    Splicing_factor_SPF45   
Domain families : Pfam (Sanger)G-patch (PF01585)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam01585    pfam00076   
Domain families : Smart (EMBL)G_patch (SM00443)  RRM_1 (SM00361)  
Conserved Domain (NCBI)RBM17
DMDM Disease mutations84991
Blocks (Seattle)RBM17
PDB (SRS)2PE8    2PEH    5LSO   
PDB (PDBSum)2PE8    2PEH    5LSO   
PDB (IMB)2PE8    2PEH    5LSO   
PDB (RSDB)2PE8    2PEH    5LSO   
Structural Biology KnowledgeBase2PE8    2PEH    5LSO   
SCOP (Structural Classification of Proteins)2PE8    2PEH    5LSO   
CATH (Classification of proteins structures)2PE8    2PEH    5LSO   
SuperfamilyQ96I25
Human Protein AtlasENSG00000134453
Peptide AtlasQ96I25
HPRD09501
IPIIPI00176706   IPI00479589   IPI00647326   IPI00647772   IPI01010186   
Protein Interaction databases
DIP (DOE-UCLA)Q96I25
IntAct (EBI)Q96I25
FunCoupENSG00000134453
BioGRIDRBM17
STRING (EMBL)RBM17
ZODIACRBM17
Ontologies - Pathways
QuickGOQ96I25
Ontology : AmiGOalternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  DNA repair  protein complex  regulation of RNA splicing  
Ontology : EGO-EBIalternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  DNA repair  protein complex  regulation of RNA splicing  
Pathways : KEGGSpliceosome   
NDEx NetworkRBM17
Atlas of Cancer Signalling NetworkRBM17
Wikipedia pathwaysRBM17
Orthology - Evolution
OrthoDB84991
GeneTree (enSembl)ENSG00000134453
Phylogenetic Trees/Animal Genes : TreeFamRBM17
HOVERGENQ96I25
HOGENOMQ96I25
Homologs : HomoloGeneRBM17
Homology/Alignments : Family Browser (UCSC)RBM17
Gene fusions - Rearrangements
Fusion : MitelmanRBM17/TWSG1 [10p15.1/18p11.22]  
Fusion: TCGARBM17 10p15.1 TWSG1 18p11.22 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM17
dbVarRBM17
ClinVarRBM17
1000_GenomesRBM17 
Exome Variant ServerRBM17
ExAC (Exome Aggregation Consortium)RBM17 (select the gene name)
Genetic variants : HAPMAP84991
Genomic Variants (DGV)RBM17 [DGVbeta]
DECIPHERRBM17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM17 
Mutations
ICGC Data PortalRBM17 
TCGA Data PortalRBM17 
Broad Tumor PortalRBM17
OASIS PortalRBM17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM17
DgiDB (Drug Gene Interaction Database)RBM17
DoCM (Curated mutations)RBM17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM17 (select a term)
intoGenRBM17
Cancer3DRBM17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606935   
Orphanet
MedgenRBM17
Genetic Testing Registry RBM17
NextProtQ96I25 [Medical]
TSGene84991
GENETestsRBM17
Target ValidationRBM17
Huge Navigator RBM17 [HugePedia]
snp3D : Map Gene to Disease84991
BioCentury BCIQRBM17
ClinGenRBM17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84991
Chemical/Pharm GKB GenePA134860993
Clinical trialRBM17
Miscellaneous
canSAR (ICR)RBM17 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM17
EVEXRBM17
GoPubMedRBM17
iHOPRBM17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:28:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.