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RBM17 (RNA binding motif protein 17)

Identity

Alias (NCBI)SPF45
HGNC (Hugo) RBM17
HGNC Alias symbSPF45
MGC14439
HGNC Alias namesplicing factor 45kDa
LocusID (NCBI) 84991
Atlas_Id 46514
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 6089034 and ends at 6117447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBM17 (10p15.1) / FSIP2 (2q32.1)RBM17 (10p15.1) / TOP2A (17q21.2)RBM17 (10p15.1) / TWSG1 (18p11.22)
RBM17 (10p15.1) / ZNF541 (19q13.33)RBM17 10p15.1 / TWSG1 18p11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBM17   16944
Cards
Entrez_Gene (NCBI)RBM17    RNA binding motif protein 17
AliasesSPF45
GeneCards (Weizmann)RBM17
Ensembl hg19 (Hinxton)ENSG00000134453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134453 [Gene_View]  ENSG00000134453 [Sequence]  chr10:6089034-6117447 [Contig_View]  RBM17 [Vega]
ICGC DataPortalENSG00000134453
TCGA cBioPortalRBM17
AceView (NCBI)RBM17
Genatlas (Paris)RBM17
SOURCE (Princeton)RBM17
Genetics Home Reference (NIH)RBM17
Genomic and cartography
GoldenPath hg38 (UCSC)RBM17  -     chr10:6089034-6117447 +  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM17  -     10p15.1   [Description]    (hg19-Feb_2009)
GoldenPathRBM17 - 10p15.1 [CytoView hg19]  RBM17 - 10p15.1 [CytoView hg38]
ImmunoBaseENSG00000134453
Genome Data Viewer NCBIRBM17 [Mapview hg19]  
OMIM606935   
Gene and transcription
Genbank (Entrez)AA905075 AF542550 AK021863 AK314952 BC007871
RefSeq transcript (Entrez)NM_001145547 NM_032905
Consensus coding sequences : CCDS (NCBI)RBM17
Gene ExpressionRBM17 [ NCBI-GEO ]   RBM17 [ EBI - ARRAY_EXPRESS ]   RBM17 [ SEEK ]   RBM17 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM17 [ Firebrowse - Broad ]
GenevisibleExpression of RBM17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84991
GTEX Portal (Tissue expression)RBM17
Human Protein AtlasENSG00000134453-RBM17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I25
PhosPhoSitePlusQ96I25
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom    Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RBM17    RRM_dom    RRM_dom_euk    SPF45_RRM   
Domain families : Pfam (Sanger)G-patch (PF01585)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam01585    pfam00076   
Domain families : Smart (EMBL)G_patch (SM00443)  RRM_1 (SM00361)  
Conserved Domain (NCBI)RBM17
PDB (RSDB)2PE8    2PEH    5LSO    6HIP   
PDB Europe2PE8    2PEH    5LSO    6HIP   
PDB (PDBSum)2PE8    2PEH    5LSO    6HIP   
PDB (IMB)2PE8    2PEH    5LSO    6HIP   
Structural Biology KnowledgeBase2PE8    2PEH    5LSO    6HIP   
SCOP (Structural Classification of Proteins)2PE8    2PEH    5LSO    6HIP   
CATH (Classification of proteins structures)2PE8    2PEH    5LSO    6HIP   
SuperfamilyQ96I25
AlphaFold pdb e-kbQ96I25   
Human Protein Atlas [tissue]ENSG00000134453-RBM17 [tissue]
HPRD09501
Protein Interaction databases
DIP (DOE-UCLA)Q96I25
IntAct (EBI)Q96I25
BioGRIDRBM17
STRING (EMBL)RBM17
ZODIACRBM17
Ontologies - Pathways
QuickGOQ96I25
Ontology : AmiGOalternative mRNA splicing, via spliceosome  alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  regulation of RNA splicing  
Ontology : EGO-EBIalternative mRNA splicing, via spliceosome  alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  regulation of RNA splicing  
Pathways : KEGGSpliceosome   
NDEx NetworkRBM17
Atlas of Cancer Signalling NetworkRBM17
Wikipedia pathwaysRBM17
Orthology - Evolution
OrthoDB84991
GeneTree (enSembl)ENSG00000134453
Phylogenetic Trees/Animal Genes : TreeFamRBM17
Homologs : HomoloGeneRBM17
Homology/Alignments : Family Browser (UCSC)RBM17
Gene fusions - Rearrangements
Fusion : MitelmanRBM17/TWSG1 [10p15.1/18p11.22]  
Fusion : QuiverRBM17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM17
dbVarRBM17
ClinVarRBM17
MonarchRBM17
1000_GenomesRBM17 
Exome Variant ServerRBM17
GNOMAD BrowserENSG00000134453
Varsome BrowserRBM17
ACMGRBM17 variants
VarityQ96I25
Genomic Variants (DGV)RBM17 [DGVbeta]
DECIPHERRBM17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM17 
Mutations
ICGC Data PortalRBM17 
TCGA Data PortalRBM17 
Broad Tumor PortalRBM17
OASIS PortalRBM17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBM17
Mutations and Diseases : HGMDRBM17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBM17
DgiDB (Drug Gene Interaction Database)RBM17
DoCM (Curated mutations)RBM17
CIViC (Clinical Interpretations of Variants in Cancer)RBM17
Cancer3DRBM17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606935   
Orphanet
DisGeNETRBM17
MedgenRBM17
Genetic Testing Registry RBM17
NextProtQ96I25 [Medical]
GENETestsRBM17
Target ValidationRBM17
Huge Navigator RBM17 [HugePedia]
ClinGenRBM17
Clinical trials, drugs, therapy
MyCancerGenomeRBM17
Protein Interactions : CTDRBM17
Pharm GKB GenePA134860993
PharosQ96I25
Clinical trialRBM17
Miscellaneous
canSAR (ICR)RBM17
HarmonizomeRBM17
DataMed IndexRBM17
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBM17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:26 CEST 2021

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