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RBM18 (RNA binding motif protein 18)

Identity

Alias_symbol (synonym)MGC2734
Other alias-
HGNC (Hugo) RBM18
LocusID (NCBI) 92400
Atlas_Id 72515
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 125001834 and ends at 125027143 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBM18 (9q33.2) / S100A9 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM18   28413
Cards
Entrez_Gene (NCBI)RBM18  92400  RNA binding motif protein 18
Aliases
GeneCards (Weizmann)RBM18
Ensembl hg19 (Hinxton) [Gene_View]  chr9:125001834-125027143 [Contig_View]  RBM18 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:125001834-125027143 [Contig_View]  RBM18 [Vega]
TCGA cBioPortalRBM18
AceView (NCBI)RBM18
Genatlas (Paris)RBM18
WikiGenes92400
SOURCE (Princeton)RBM18
Genetics Home Reference (NIH)RBM18
Genomic and cartography
GoldenPath hg19 (UCSC)RBM18  -     chr9:125001834-125027143 -  9q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM18  -     9q33.2   [Description]    (hg38-Dec_2013)
EnsemblRBM18 - 9q33.2 [CytoView hg19]  RBM18 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIRBM18 [Mapview hg19]  RBM18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026870 AK057676 AK299625 AK301050 AK310008
RefSeq transcript (Entrez)NM_033117
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)RBM18
Cluster EST : UnigeneHs.415842 [ NCBI ]
CGAP (NCI)Hs.415842
Gene ExpressionRBM18 [ NCBI-GEO ]   RBM18 [ EBI - ARRAY_EXPRESS ]   RBM18 [ SEEK ]   RBM18 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92400
GTEX Portal (Tissue expression)RBM18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H35
Splice isoforms : SwissVarQ96H35
PhosPhoSitePlusQ96H35
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM18
DMDM Disease mutations92400
Blocks (Seattle)RBM18
SuperfamilyQ96H35
Peptide AtlasQ96H35
HPRD15224
IPIIPI00062751   IPI00910564   
Protein Interaction databases
DIP (DOE-UCLA)Q96H35
IntAct (EBI)Q96H35
BioGRIDRBM18
STRING (EMBL)RBM18
ZODIACRBM18
Ontologies - Pathways
QuickGOQ96H35
Ontology : AmiGOnucleotide binding  positive regulation of defense response to virus by host  RNA binding  
Ontology : EGO-EBInucleotide binding  positive regulation of defense response to virus by host  RNA binding  
NDEx NetworkRBM18
Atlas of Cancer Signalling NetworkRBM18
Wikipedia pathwaysRBM18
Orthology - Evolution
OrthoDB92400
Phylogenetic Trees/Animal Genes : TreeFamRBM18
HOVERGENQ96H35
HOGENOMQ96H35
Homologs : HomoloGeneRBM18
Homology/Alignments : Family Browser (UCSC)RBM18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM18
dbVarRBM18
ClinVarRBM18
1000_GenomesRBM18 
Exome Variant ServerRBM18
ExAC (Exome Aggregation Consortium)RBM18 (select the gene name)
Genetic variants : HAPMAP92400
Genomic Variants (DGV)RBM18 [DGVbeta]
DECIPHER (Syndromes)9:125001834-125027143  
CONAN: Copy Number AnalysisRBM18 
Mutations
ICGC Data PortalRBM18 
TCGA Data PortalRBM18 
Broad Tumor PortalRBM18
OASIS PortalRBM18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM18
DgiDB (Drug Gene Interaction Database)RBM18
DoCM (Curated mutations)RBM18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM18 (select a term)
intoGenRBM18
Cancer3DRBM18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM18
Genetic Testing Registry RBM18
NextProtQ96H35 [Medical]
TSGene92400
GENETestsRBM18
Huge Navigator RBM18 [HugePedia]
snp3D : Map Gene to Disease92400
BioCentury BCIQRBM18
ClinGenRBM18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92400
Chemical/Pharm GKB GenePA134928031
Clinical trialRBM18
Miscellaneous
canSAR (ICR)RBM18 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM18
EVEXRBM18
GoPubMedRBM18
iHOPRBM18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:39 CET 2017

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