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RBM19 (RNA binding motif protein 19)

Identity

Alias_symbol (synonym)DKFZp586F1023
KIAA0682
Other alias-
HGNC (Hugo) RBM19
LocusID (NCBI) 9904
Atlas_Id 72516
Location 12q24.13  [Link to chromosome band 12q24]
Location_base_pair Starts at 114259859 and ends at 114404176 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBM19 (12q24.13) / CLK2 (1q22)RBM19 (12q24.13) / HDHD3 (9q32)RBM19 (12q24.13) / HIBADH (7p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM19   29098
Cards
Entrez_Gene (NCBI)RBM19  9904  RNA binding motif protein 19
Aliases
GeneCards (Weizmann)RBM19
Ensembl hg19 (Hinxton)ENSG00000122965 [Gene_View]  chr12:114259859-114404176 [Contig_View]  RBM19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122965 [Gene_View]  chr12:114259859-114404176 [Contig_View]  RBM19 [Vega]
ICGC DataPortalENSG00000122965
TCGA cBioPortalRBM19
AceView (NCBI)RBM19
Genatlas (Paris)RBM19
WikiGenes9904
SOURCE (Princeton)RBM19
Genetics Home Reference (NIH)RBM19
Genomic and cartography
GoldenPath hg19 (UCSC)RBM19  -     chr12:114259859-114404176 -  12q24.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM19  -     12q24.13   [Description]    (hg38-Dec_2013)
EnsemblRBM19 - 12q24.13 [CytoView hg19]  RBM19 - 12q24.13 [CytoView hg38]
Mapping of homologs : NCBIRBM19 [Mapview hg19]  RBM19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA594568 AB014582 AI218902 AK291444 AK314606
RefSeq transcript (Entrez)NM_001146698 NM_001146699 NM_016196
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)RBM19
Cluster EST : UnigeneHs.7482 [ NCBI ]
CGAP (NCI)Hs.7482
Alternative Splicing GalleryENSG00000122965
Gene ExpressionRBM19 [ NCBI-GEO ]   RBM19 [ EBI - ARRAY_EXPRESS ]   RBM19 [ SEEK ]   RBM19 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9904
GTEX Portal (Tissue expression)RBM19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4C8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4C8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4C8
Splice isoforms : SwissVarQ9Y4C8
PhosPhoSitePlusQ9Y4C8
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM19
DMDM Disease mutations9904
Blocks (Seattle)RBM19
PDB (SRS)2DGW   
PDB (PDBSum)2DGW   
PDB (IMB)2DGW   
PDB (RSDB)2DGW   
Structural Biology KnowledgeBase2DGW   
SCOP (Structural Classification of Proteins)2DGW   
CATH (Classification of proteins structures)2DGW   
SuperfamilyQ9Y4C8
Human Protein AtlasENSG00000122965
Peptide AtlasQ9Y4C8
HPRD15225
IPIIPI00000686   IPI01022254   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4C8
IntAct (EBI)Q9Y4C8
FunCoupENSG00000122965
BioGRIDRBM19
STRING (EMBL)RBM19
ZODIACRBM19
Ontologies - Pathways
QuickGOQ9Y4C8
Ontology : AmiGOnucleotide binding  nucleus  nucleoplasm  nucleoplasm  chromosome  nucleolus  nucleolus  cytoplasm  cytoplasm  multicellular organismal development  membrane  positive regulation of embryonic development  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  nucleus  nucleoplasm  nucleoplasm  chromosome  nucleolus  nucleolus  cytoplasm  cytoplasm  multicellular organismal development  membrane  positive regulation of embryonic development  poly(A) RNA binding  
NDEx NetworkRBM19
Atlas of Cancer Signalling NetworkRBM19
Wikipedia pathwaysRBM19
Orthology - Evolution
OrthoDB9904
GeneTree (enSembl)ENSG00000122965
Phylogenetic Trees/Animal Genes : TreeFamRBM19
HOVERGENQ9Y4C8
HOGENOMQ9Y4C8
Homologs : HomoloGeneRBM19
Homology/Alignments : Family Browser (UCSC)RBM19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM19
dbVarRBM19
ClinVarRBM19
1000_GenomesRBM19 
Exome Variant ServerRBM19
ExAC (Exome Aggregation Consortium)RBM19 (select the gene name)
Genetic variants : HAPMAP9904
Genomic Variants (DGV)RBM19 [DGVbeta]
DECIPHER (Syndromes)12:114259859-114404176  ENSG00000122965
CONAN: Copy Number AnalysisRBM19 
Mutations
ICGC Data PortalRBM19 
TCGA Data PortalRBM19 
Broad Tumor PortalRBM19
OASIS PortalRBM19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM19
DgiDB (Drug Gene Interaction Database)RBM19
DoCM (Curated mutations)RBM19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM19 (select a term)
intoGenRBM19
Cancer3DRBM19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM19
Genetic Testing Registry RBM19
NextProtQ9Y4C8 [Medical]
TSGene9904
GENETestsRBM19
Huge Navigator RBM19 [HugePedia]
snp3D : Map Gene to Disease9904
BioCentury BCIQRBM19
ClinGenRBM19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9904
Chemical/Pharm GKB GenePA134886784
Clinical trialRBM19
Miscellaneous
canSAR (ICR)RBM19 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM19
EVEXRBM19
GoPubMedRBM19
iHOPRBM19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:39 CET 2017

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