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RBM20 (RNA binding motif protein 20)

Identity

Alias (NCBI)-
HGNC (Hugo) RBM20
LocusID (NCBI) 282996
Atlas_Id 54576
Location 10q25.2  [Link to chromosome band 10q25]
Location_base_pair Starts at 110644336 and ends at 110839468 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SHOC2 (10q25.2) / RBM20 (10q25.2)TUBB4A (19p13.3) / RBM20 (10q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBM20   27424
LRG (Locus Reference Genomic)LRG_382
Cards
Entrez_Gene (NCBI)RBM20    RNA binding motif protein 20
Aliases
GeneCards (Weizmann)RBM20
Ensembl hg19 (Hinxton)ENSG00000203867 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203867 [Gene_View]  ENSG00000203867 [Sequence]  chr10:110644336-110839468 [Contig_View]  RBM20 [Vega]
ICGC DataPortalENSG00000203867
TCGA cBioPortalRBM20
AceView (NCBI)RBM20
Genatlas (Paris)RBM20
SOURCE (Princeton)RBM20
Genetics Home Reference (NIH)RBM20
Genomic and cartography
GoldenPath hg38 (UCSC)RBM20  -     chr10:110644336-110839468 +  10q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM20  -     10q25.2   [Description]    (hg19-Feb_2009)
GoldenPathRBM20 - 10q25.2 [CytoView hg19]  RBM20 - 10q25.2 [CytoView hg38]
ImmunoBaseENSG00000203867
Genome Data Viewer NCBIRBM20 [Mapview hg19]  
OMIM613171   613172   
Gene and transcription
Genbank (Entrez)AK302802 AL832084 BX648563 CB044334 EU822950
RefSeq transcript (Entrez)NM_001134363
Consensus coding sequences : CCDS (NCBI)RBM20
Gene ExpressionRBM20 [ NCBI-GEO ]   RBM20 [ EBI - ARRAY_EXPRESS ]   RBM20 [ SEEK ]   RBM20 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM20 [ Firebrowse - Broad ]
GenevisibleExpression of RBM20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)282996
GTEX Portal (Tissue expression)RBM20
Human Protein AtlasENSG00000203867-RBM20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T481   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T481  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T481
PhosPhoSitePlusQ5T481
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_MATRIN (PS50171)   
Domains : Interpro (EBI)Matrin/U1-C_Znf_C2H2    Matrin/U1-like-C_Znf_C2H2    Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RBM20    RBM20_RRM    RRM_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RRM (SM00360)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)RBM20
SuperfamilyQ5T481
AlphaFold pdb e-kbQ5T481   
Human Protein Atlas [tissue]ENSG00000203867-RBM20 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5T481
IntAct (EBI)Q5T481
BioGRIDRBM20
STRING (EMBL)RBM20
ZODIACRBM20
Ontologies - Pathways
QuickGOQ5T481
Ontology : AmiGORNA binding  mRNA binding  protein binding  nucleus  nucleus  mRNA processing  heart development  zinc ion binding  RNA splicing  positive regulation of RNA splicing  regulation of RNA splicing  
Ontology : EGO-EBIRNA binding  mRNA binding  protein binding  nucleus  nucleus  mRNA processing  heart development  zinc ion binding  RNA splicing  positive regulation of RNA splicing  regulation of RNA splicing  
NDEx NetworkRBM20
Atlas of Cancer Signalling NetworkRBM20
Wikipedia pathwaysRBM20
Orthology - Evolution
OrthoDB282996
GeneTree (enSembl)ENSG00000203867
Phylogenetic Trees/Animal Genes : TreeFamRBM20
Homologs : HomoloGeneRBM20
Homology/Alignments : Family Browser (UCSC)RBM20
Gene fusions - Rearrangements
Fusion : MitelmanSHOC2/RBM20 [10q25.2/10q25.2]  
Fusion : QuiverRBM20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM20
dbVarRBM20
ClinVarRBM20
MonarchRBM20
1000_GenomesRBM20 
Exome Variant ServerRBM20
GNOMAD BrowserENSG00000203867
Varsome BrowserRBM20
ACMGRBM20 variants
VarityQ5T481
Genomic Variants (DGV)RBM20 [DGVbeta]
DECIPHERRBM20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM20 
Mutations
ICGC Data PortalRBM20 
TCGA Data PortalRBM20 
Broad Tumor PortalRBM20
OASIS PortalRBM20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBM20
Mutations and Diseases : HGMDRBM20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBM20
DgiDB (Drug Gene Interaction Database)RBM20
DoCM (Curated mutations)RBM20
CIViC (Clinical Interpretations of Variants in Cancer)RBM20
Cancer3DRBM20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613171    613172   
Orphanet635   
DisGeNETRBM20
MedgenRBM20
Genetic Testing Registry RBM20
NextProtQ5T481 [Medical]
GENETestsRBM20
Target ValidationRBM20
Huge Navigator RBM20 [HugePedia]
ClinGenRBM20
Clinical trials, drugs, therapy
MyCancerGenomeRBM20
Protein Interactions : CTDRBM20
Pharm GKB GenePA134934622
PharosQ5T481
Clinical trialRBM20
Miscellaneous
canSAR (ICR)RBM20
HarmonizomeRBM20
DataMed IndexRBM20
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBM20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:27 CEST 2021

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