Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RBM22 (RNA binding motif protein 22)

Identity

Alias_symbol (synonym)FLJ10290
ZC3H16
fSAP47
Cwc2
Other alias
HGNC (Hugo) RBM22
LocusID (NCBI) 55696
Atlas_Id 50209
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 150690790 and ends at 150701107 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NR3C1 (5q31.3) / RBM22 (5q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM22   25503
Cards
Entrez_Gene (NCBI)RBM22  55696  RNA binding motif protein 22
AliasesCwc2; ZC3H16; fSAP47
GeneCards (Weizmann)RBM22
Ensembl hg19 (Hinxton)ENSG00000086589 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000086589 [Gene_View]  chr5:150690790-150701107 [Contig_View]  RBM22 [Vega]
ICGC DataPortalENSG00000086589
TCGA cBioPortalRBM22
AceView (NCBI)RBM22
Genatlas (Paris)RBM22
WikiGenes55696
SOURCE (Princeton)RBM22
Genetics Home Reference (NIH)RBM22
Genomic and cartography
GoldenPath hg38 (UCSC)RBM22  -     chr5:150690790-150701107 -  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM22  -     5q33.1   [Description]    (hg19-Feb_2009)
EnsemblRBM22 - 5q33.1 [CytoView hg19]  RBM22 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBIRBM22 [Mapview hg19]  RBM22 [Mapview hg38]
OMIM612430   
Gene and transcription
Genbank (Entrez)AK001152 AK096728 AK297019 AL136933 AM393639
RefSeq transcript (Entrez)NM_018047
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM22
Cluster EST : UnigeneHs.713564 [ NCBI ]
CGAP (NCI)Hs.713564
Alternative Splicing GalleryENSG00000086589
Gene ExpressionRBM22 [ NCBI-GEO ]   RBM22 [ EBI - ARRAY_EXPRESS ]   RBM22 [ SEEK ]   RBM22 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55696
GTEX Portal (Tissue expression)RBM22
Human Protein AtlasENSG00200087509-RBM22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NW64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NW64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NW64
Splice isoforms : SwissVarQ9NW64
PhosPhoSitePlusQ9NW64
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    Znf_CCCH   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)RBM22
DMDM Disease mutations55696
Blocks (Seattle)RBM22
PDB (SRS)2YTC   
PDB (PDBSum)2YTC   
PDB (IMB)2YTC   
PDB (RSDB)2YTC   
Structural Biology KnowledgeBase2YTC   
SCOP (Structural Classification of Proteins)2YTC   
CATH (Classification of proteins structures)2YTC   
SuperfamilyQ9NW64
Human Protein Atlas [tissue]ENSG00000086589-RBM22 [tissue]
Peptide AtlasQ9NW64
HPRD10186
IPIIPI00019046   IPI00909290   IPI00979459   IPI00973998   
Protein Interaction databases
DIP (DOE-UCLA)Q9NW64
IntAct (EBI)Q9NW64
FunCoupENSG00000086589
BioGRIDRBM22
STRING (EMBL)RBM22
ZODIACRBM22
Ontologies - Pathways
QuickGOQ9NW64
Ontology : AmiGOprotein import into nucleus, translocation  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  Prp19 complex  RNA binding  nucleocytoplasmic transporter activity  protein binding  nucleus  nucleoplasm  cytoplasm  U6 snRNA binding  positive regulation of RNA splicing  cellular response to drug  pre-mRNA binding  mRNA cis splicing, via spliceosome  metal ion binding  calcium-dependent protein binding  U2-type catalytic step 1 spliceosome  U2-type catalytic step 2 spliceosome  catalytic step 2 spliceosome  positive regulation of intracellular protein transport  
Ontology : EGO-EBIprotein import into nucleus, translocation  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  Prp19 complex  RNA binding  nucleocytoplasmic transporter activity  protein binding  nucleus  nucleoplasm  cytoplasm  U6 snRNA binding  positive regulation of RNA splicing  cellular response to drug  pre-mRNA binding  mRNA cis splicing, via spliceosome  metal ion binding  calcium-dependent protein binding  U2-type catalytic step 1 spliceosome  U2-type catalytic step 2 spliceosome  catalytic step 2 spliceosome  positive regulation of intracellular protein transport  
Pathways : KEGGSpliceosome   
NDEx NetworkRBM22
Atlas of Cancer Signalling NetworkRBM22
Wikipedia pathwaysRBM22
Orthology - Evolution
OrthoDB55696
GeneTree (enSembl)ENSG00000086589
Phylogenetic Trees/Animal Genes : TreeFamRBM22
HOVERGENQ9NW64
HOGENOMQ9NW64
Homologs : HomoloGeneRBM22
Homology/Alignments : Family Browser (UCSC)RBM22
Gene fusions - Rearrangements
Tumor Fusion PortalRBM22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM22
dbVarRBM22
ClinVarRBM22
1000_GenomesRBM22 
Exome Variant ServerRBM22
ExAC (Exome Aggregation Consortium)ENSG00000086589
GNOMAD BrowserENSG00000086589
Genetic variants : HAPMAP55696
Genomic Variants (DGV)RBM22 [DGVbeta]
DECIPHERRBM22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM22 
Mutations
ICGC Data PortalRBM22 
TCGA Data PortalRBM22 
Broad Tumor PortalRBM22
OASIS PortalRBM22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM22
DgiDB (Drug Gene Interaction Database)RBM22
DoCM (Curated mutations)RBM22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM22 (select a term)
intoGenRBM22
Cancer3DRBM22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612430   
Orphanet
DisGeNETRBM22
MedgenRBM22
Genetic Testing Registry RBM22
NextProtQ9NW64 [Medical]
TSGene55696
GENETestsRBM22
Target ValidationRBM22
Huge Navigator RBM22 [HugePedia]
snp3D : Map Gene to Disease55696
BioCentury BCIQRBM22
ClinGenRBM22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55696
Chemical/Pharm GKB GenePA134982384
Clinical trialRBM22
Miscellaneous
canSAR (ICR)RBM22 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM22
EVEXRBM22
GoPubMedRBM22
iHOPRBM22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:31:55 CET 2017

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