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RBM23 (RNA binding motif protein 23)

Identity

Alias_namesRNPC4
RNA-binding region (RNP1, RRM) containing 4
Alias_symbol (synonym)FLJ10482
CAPERbeta
Other aliasPP239
HGNC (Hugo) RBM23
LocusID (NCBI) 55147
Atlas_Id 72517
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 23369854 and ends at 23388396 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBM23 (14q11.2) / FLJ44635 (Xq13.1)RBM23 (14q11.2) / SLC7A8 (14q11.2)SYBU (8q23.2) / RBM23 (14q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM23   20155
Cards
Entrez_Gene (NCBI)RBM23  55147  RNA binding motif protein 23
AliasesCAPERbeta; PP239; RNPC4
GeneCards (Weizmann)RBM23
Ensembl hg19 (Hinxton)ENSG00000100461 [Gene_View]  chr14:23369854-23388396 [Contig_View]  RBM23 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100461 [Gene_View]  chr14:23369854-23388396 [Contig_View]  RBM23 [Vega]
ICGC DataPortalENSG00000100461
TCGA cBioPortalRBM23
AceView (NCBI)RBM23
Genatlas (Paris)RBM23
WikiGenes55147
SOURCE (Princeton)RBM23
Genetics Home Reference (NIH)RBM23
Genomic and cartography
GoldenPath hg19 (UCSC)RBM23  -     chr14:23369854-23388396 -  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM23  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblRBM23 - 14q11.2 [CytoView hg19]  RBM23 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIRBM23 [Mapview hg19]  RBM23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA987387 AF087905 AF275678 AK001344 AK125593
RefSeq transcript (Entrez)NM_001077351 NM_001077352 NM_001308044 NM_018107
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)RBM23
Cluster EST : UnigeneHs.4997 [ NCBI ]
CGAP (NCI)Hs.4997
Alternative Splicing GalleryENSG00000100461
Gene ExpressionRBM23 [ NCBI-GEO ]   RBM23 [ EBI - ARRAY_EXPRESS ]   RBM23 [ SEEK ]   RBM23 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55147
GTEX Portal (Tissue expression)RBM23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86U06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86U06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86U06
Splice isoforms : SwissVarQ86U06
PhosPhoSitePlusQ86U06
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM39_linker    RBM39_SF    RRM_dom   
Domain families : Pfam (Sanger)RBM39linker (PF15519)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam15519    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM23
DMDM Disease mutations55147
Blocks (Seattle)RBM23
PDB (SRS)2CQ4    2DNZ   
PDB (PDBSum)2CQ4    2DNZ   
PDB (IMB)2CQ4    2DNZ   
PDB (RSDB)2CQ4    2DNZ   
Structural Biology KnowledgeBase2CQ4    2DNZ   
SCOP (Structural Classification of Proteins)2CQ4    2DNZ   
CATH (Classification of proteins structures)2CQ4    2DNZ   
SuperfamilyQ86U06
Human Protein AtlasENSG00000100461
Peptide AtlasQ86U06
HPRD15227
IPIIPI00386141   IPI00376960   IPI00168431   IPI00376962   IPI00376963   IPI00922047   IPI01026224   IPI00977373   IPI01025820   IPI01025465   IPI01025238   IPI01025359   IPI01024960   IPI01024712   IPI01024855   IPI01026377   IPI01026332   IPI01026010   IPI01025726   IPI01025732   IPI01010168   
Protein Interaction databases
DIP (DOE-UCLA)Q86U06
IntAct (EBI)Q86U06
FunCoupENSG00000100461
BioGRIDRBM23
STRING (EMBL)RBM23
ZODIACRBM23
Ontologies - Pathways
QuickGOQ86U06
Ontology : AmiGOnucleotide binding  RNA binding  protein binding  nucleus  mRNA processing  membrane  
Ontology : EGO-EBInucleotide binding  RNA binding  protein binding  nucleus  mRNA processing  membrane  
NDEx NetworkRBM23
Atlas of Cancer Signalling NetworkRBM23
Wikipedia pathwaysRBM23
Orthology - Evolution
OrthoDB55147
GeneTree (enSembl)ENSG00000100461
Phylogenetic Trees/Animal Genes : TreeFamRBM23
HOVERGENQ86U06
HOGENOMQ86U06
Homologs : HomoloGeneRBM23
Homology/Alignments : Family Browser (UCSC)RBM23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM23
dbVarRBM23
ClinVarRBM23
1000_GenomesRBM23 
Exome Variant ServerRBM23
ExAC (Exome Aggregation Consortium)RBM23 (select the gene name)
Genetic variants : HAPMAP55147
Genomic Variants (DGV)RBM23 [DGVbeta]
DECIPHER (Syndromes)14:23369854-23388396  ENSG00000100461
CONAN: Copy Number AnalysisRBM23 
Mutations
ICGC Data PortalRBM23 
TCGA Data PortalRBM23 
Broad Tumor PortalRBM23
OASIS PortalRBM23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM23
DgiDB (Drug Gene Interaction Database)RBM23
DoCM (Curated mutations)RBM23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM23 (select a term)
intoGenRBM23
Cancer3DRBM23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM23
Genetic Testing Registry RBM23
NextProtQ86U06 [Medical]
TSGene55147
GENETestsRBM23
Huge Navigator RBM23 [HugePedia]
snp3D : Map Gene to Disease55147
BioCentury BCIQRBM23
ClinGenRBM23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55147
Chemical/Pharm GKB GenePA134974852
Clinical trialRBM23
Miscellaneous
canSAR (ICR)RBM23 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM23
EVEXRBM23
GoPubMedRBM23
iHOPRBM23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:39 CET 2017

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