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RBM24 (RNA binding motif protein 24)

Identity

Alias_namesRNPC6
RNA-binding region (RNP1
Alias_symbol (synonym)FLJ30829
dJ259A10.1
Other alias
HGNC (Hugo) RBM24
LocusID (NCBI) 221662
Atlas_Id 53877
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 17282701 and ends at 17293868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDKAL1 (6p22.3) / RBM24 (6p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  CDKAL1/RBM24 (6p22)


External links

Nomenclature
HGNC (Hugo)RBM24   21539
Cards
Entrez_Gene (NCBI)RBM24  221662  RNA binding motif protein 24
AliasesRNPC6; dJ259A10.1
GeneCards (Weizmann)RBM24
Ensembl hg19 (Hinxton)ENSG00000112183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112183 [Gene_View]  ENSG00000112183 [Sequence]  chr6:17282701-17293868 [Contig_View]  RBM24 [Vega]
ICGC DataPortalENSG00000112183
TCGA cBioPortalRBM24
AceView (NCBI)RBM24
Genatlas (Paris)RBM24
WikiGenes221662
SOURCE (Princeton)RBM24
Genetics Home Reference (NIH)RBM24
Genomic and cartography
GoldenPath hg38 (UCSC)RBM24  -     chr6:17282701-17293868 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM24  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblRBM24 - 6p22.3 [CytoView hg19]  RBM24 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIRBM24 [Mapview hg19]  RBM24 [Mapview hg38]
OMIM617603   
Gene and transcription
Genbank (Entrez)AK055391 AK095016 AK129865 AK293052 AK300062
RefSeq transcript (Entrez)NM_001143941 NM_001143942 NM_153020
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM24
Cluster EST : UnigeneHs.519904 [ NCBI ]
CGAP (NCI)Hs.519904
Alternative Splicing GalleryENSG00000112183
Gene ExpressionRBM24 [ NCBI-GEO ]   RBM24 [ EBI - ARRAY_EXPRESS ]   RBM24 [ SEEK ]   RBM24 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221662
GTEX Portal (Tissue expression)RBM24
Human Protein AtlasENSG00000112183-RBM24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX46
Splice isoforms : SwissVarQ9BX46
PhosPhoSitePlusQ9BX46
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM24
DMDM Disease mutations221662
Blocks (Seattle)RBM24
SuperfamilyQ9BX46
Human Protein Atlas [tissue]ENSG00000112183-RBM24 [tissue]
Peptide AtlasQ9BX46
HPRD15228
IPIIPI00827745   IPI00411370   IPI00843960   IPI00921027   IPI00967270   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX46
IntAct (EBI)Q9BX46
FunCoupENSG00000112183
BioGRIDRBM24
STRING (EMBL)RBM24
ZODIACRBM24
Ontologies - Pathways
QuickGOQ9BX46
Ontology : AmiGOregulation of alternative mRNA splicing, via spliceosome  regulation of alternative mRNA splicing, via spliceosome  endocardial cushion development  RNA binding  mRNA 3'-UTR binding  mRNA 3'-UTR binding  protein binding  nucleoplasm  cytosol  cytosol  mRNA processing  cellular response to DNA damage stimulus  RNA splicing  regulation of myotube differentiation  positive regulation of myotube differentiation  cell differentiation  mRNA 3'-UTR AU-rich region binding  regulation of mRNA stability  positive regulation of myoblast differentiation  mRNA stabilization  mRNA destabilization  3'-UTR-mediated mRNA destabilization  pre-mRNA intronic binding  positive regulation of skeletal muscle fiber differentiation  positive regulation of 3'-UTR-mediated mRNA stabilization  mRNA CDS binding  sequence-specific mRNA binding  ribonucleoprotein complex  positive regulation of stem cell differentiation  negative regulation of cytoplasmic translation  
Ontology : EGO-EBIregulation of alternative mRNA splicing, via spliceosome  regulation of alternative mRNA splicing, via spliceosome  endocardial cushion development  RNA binding  mRNA 3'-UTR binding  mRNA 3'-UTR binding  protein binding  nucleoplasm  cytosol  cytosol  mRNA processing  cellular response to DNA damage stimulus  RNA splicing  regulation of myotube differentiation  positive regulation of myotube differentiation  cell differentiation  mRNA 3'-UTR AU-rich region binding  regulation of mRNA stability  positive regulation of myoblast differentiation  mRNA stabilization  mRNA destabilization  3'-UTR-mediated mRNA destabilization  pre-mRNA intronic binding  positive regulation of skeletal muscle fiber differentiation  positive regulation of 3'-UTR-mediated mRNA stabilization  mRNA CDS binding  sequence-specific mRNA binding  ribonucleoprotein complex  positive regulation of stem cell differentiation  negative regulation of cytoplasmic translation  
NDEx NetworkRBM24
Atlas of Cancer Signalling NetworkRBM24
Wikipedia pathwaysRBM24
Orthology - Evolution
OrthoDB221662
GeneTree (enSembl)ENSG00000112183
Phylogenetic Trees/Animal Genes : TreeFamRBM24
HOVERGENQ9BX46
HOGENOMQ9BX46
Homologs : HomoloGeneRBM24
Homology/Alignments : Family Browser (UCSC)RBM24
Gene fusions - Rearrangements
Fusion : MitelmanCDKAL1/RBM24 [6p22.3/6p22.3]  [t(6;6)(p22;p22)]  
Fusion : QuiverRBM24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM24
dbVarRBM24
ClinVarRBM24
1000_GenomesRBM24 
Exome Variant ServerRBM24
ExAC (Exome Aggregation Consortium)ENSG00000112183
GNOMAD BrowserENSG00000112183
Varsome BrowserRBM24
Genetic variants : HAPMAP221662
Genomic Variants (DGV)RBM24 [DGVbeta]
DECIPHERRBM24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM24 
Mutations
ICGC Data PortalRBM24 
TCGA Data PortalRBM24 
Broad Tumor PortalRBM24
OASIS PortalRBM24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM24
DgiDB (Drug Gene Interaction Database)RBM24
DoCM (Curated mutations)RBM24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM24 (select a term)
intoGenRBM24
Cancer3DRBM24(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617603   
Orphanet
DisGeNETRBM24
MedgenRBM24
Genetic Testing Registry RBM24
NextProtQ9BX46 [Medical]
TSGene221662
GENETestsRBM24
Target ValidationRBM24
Huge Navigator RBM24 [HugePedia]
snp3D : Map Gene to Disease221662
BioCentury BCIQRBM24
ClinGenRBM24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221662
Chemical/Pharm GKB GenePA134964569
Clinical trialRBM24
Miscellaneous
canSAR (ICR)RBM24 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM24
EVEXRBM24
GoPubMedRBM24
iHOPRBM24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:34:51 CET 2018

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