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RBM25 (RNA binding motif protein 25)

Identity

Alias_namesRNPC7
RNA-binding region (RNP1, RRM) containing 7
Alias_symbol (synonym)S164
fSAP94
NET52
Snu71
Other aliasRED120
HGNC (Hugo) RBM25
LocusID (NCBI) 58517
Atlas_Id 72518
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 73058513 and ends at 73121368 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCL (2q37.1) / RBM25 (14q24.2)PLXNB2 (22q13.33) / RBM25 (14q24.2)RBM25 (14q24.2) / CENPT (16q22.1)
RBM25 (14q24.2) / CHST6 (16q23.1)RBM25 (14q24.2) / RBM25 (14q24.2)RBM25 (14q24.2) / SRP9 (1q42.12)
RBM25 (14q24.2) / UNC5B (10q22.1)RBM25 (14q24.2) / VRTN (14q24.3)YTHDC1 (4q13.2) / RBM25 (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM25   23244
Cards
Entrez_Gene (NCBI)RBM25  58517  RNA binding motif protein 25
AliasesNET52; RED120; RNPC7; S164; 
Snu71; fSAP94
GeneCards (Weizmann)RBM25
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:73058513-73121368 [Contig_View]  RBM25 [Vega]
TCGA cBioPortalRBM25
AceView (NCBI)RBM25
Genatlas (Paris)RBM25
WikiGenes58517
SOURCE (Princeton)RBM25
Genetics Home Reference (NIH)RBM25
Genomic and cartography
GoldenPath hg38 (UCSC)RBM25  -     chr14:73058513-73121368 +  14q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM25  -     14q24.2   [Description]    (hg19-Feb_2009)
EnsemblRBM25 - 14q24.2 [CytoView hg19]  RBM25 - 14q24.2 [CytoView hg38]
Mapping of homologs : NCBIRBM25 [Mapview hg19]  RBM25 [Mapview hg38]
OMIM612427   
Gene and transcription
Genbank (Entrez)AK026107 AK094697 AK125513 AL832314 AL833497
RefSeq transcript (Entrez)NM_021239
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM25
Cluster EST : UnigeneHs.531106 [ NCBI ]
CGAP (NCI)Hs.531106
Gene ExpressionRBM25 [ NCBI-GEO ]   RBM25 [ EBI - ARRAY_EXPRESS ]   RBM25 [ SEEK ]   RBM25 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58517
GTEX Portal (Tissue expression)RBM25
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49756   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49756  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49756
Splice isoforms : SwissVarP49756
PhosPhoSitePlusP49756
Domaine pattern : Prosite (Expaxy)PWI (PS51025)    RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    PWI_dom    RBM25_RRM    RRM_dom   
Domain families : Pfam (Sanger)PWI (PF01480)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam01480    pfam00076   
Domain families : Smart (EMBL)PWI (SM00311)  RRM (SM00360)  
Conserved Domain (NCBI)RBM25
DMDM Disease mutations58517
Blocks (Seattle)RBM25
PDB (SRS)3V53   
PDB (PDBSum)3V53   
PDB (IMB)3V53   
PDB (RSDB)3V53   
Structural Biology KnowledgeBase3V53   
SCOP (Structural Classification of Proteins)3V53   
CATH (Classification of proteins structures)3V53   
SuperfamilyP49756
Peptide AtlasP49756
HPRD15229
IPIIPI00004273   IPI00926163   IPI00924634   IPI00925670   IPI00982364   IPI00981252   IPI00979500   
Protein Interaction databases
DIP (DOE-UCLA)P49756
IntAct (EBI)P49756
BioGRIDRBM25
STRING (EMBL)RBM25
ZODIACRBM25
Ontologies - Pathways
QuickGOP49756
Ontology : AmiGOregulation of alternative mRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  spliceosomal complex  cytoplasm  mRNA processing  RNA splicing  nuclear speck  regulation of apoptotic process  
Ontology : EGO-EBIregulation of alternative mRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  spliceosomal complex  cytoplasm  mRNA processing  RNA splicing  nuclear speck  regulation of apoptotic process  
Pathways : KEGGSpliceosome   
NDEx NetworkRBM25
Atlas of Cancer Signalling NetworkRBM25
Wikipedia pathwaysRBM25
Orthology - Evolution
OrthoDB58517
Phylogenetic Trees/Animal Genes : TreeFamRBM25
HOVERGENP49756
HOGENOMP49756
Homologs : HomoloGeneRBM25
Homology/Alignments : Family Browser (UCSC)RBM25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM25
dbVarRBM25
ClinVarRBM25
1000_GenomesRBM25 
Exome Variant ServerRBM25
ExAC (Exome Aggregation Consortium)RBM25 (select the gene name)
Genetic variants : HAPMAP58517
Genomic Variants (DGV)RBM25 [DGVbeta]
DECIPHERRBM25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM25 
Mutations
ICGC Data PortalRBM25 
TCGA Data PortalRBM25 
Broad Tumor PortalRBM25
OASIS PortalRBM25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM25
DgiDB (Drug Gene Interaction Database)RBM25
DoCM (Curated mutations)RBM25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM25 (select a term)
intoGenRBM25
Cancer3DRBM25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612427   
Orphanet
MedgenRBM25
Genetic Testing Registry RBM25
NextProtP49756 [Medical]
TSGene58517
GENETestsRBM25
Target ValidationRBM25
Huge Navigator RBM25 [HugePedia]
snp3D : Map Gene to Disease58517
BioCentury BCIQRBM25
ClinGenRBM25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58517
Chemical/Pharm GKB GenePA134912024
Clinical trialRBM25
Miscellaneous
canSAR (ICR)RBM25 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM25
EVEXRBM25
GoPubMedRBM25
iHOPRBM25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:17 CEST 2017

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