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RBM26 (RNA binding motif protein 26)

Identity

Alias_namesC13orf10
chromosome 13 open reading frame 10
Alias_symbol (synonym)PRO1777
SE70-2
FLJ20957
ZC3H17
ARRS2
PPP1R132
Other alias
HGNC (Hugo) RBM26
LocusID (NCBI) 64062
Atlas_Id 863
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 79893003 and ends at 79980356 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BIVM-ERCC5 (13q33.1) / RBM26 (13q31.1)RBM26 (13q31.1) / TMBIM6 (12q13.12)RBPMS (8p12) / RBM26 (13q31.1)
SNRNP200 (2q11.2) / RBM26 (13q31.1)TOM1L2 (17p11.2) / RBM26 (13q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM26   20327
Cards
Entrez_Gene (NCBI)RBM26  64062  RNA binding motif protein 26
AliasesARRS2; C13orf10; PPP1R132; PRO1777; 
SE70-2; ZC3H17
GeneCards (Weizmann)RBM26
Ensembl hg19 (Hinxton)ENSG00000139746 [Gene_View]  chr13:79893003-79980356 [Contig_View]  RBM26 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139746 [Gene_View]  chr13:79893003-79980356 [Contig_View]  RBM26 [Vega]
ICGC DataPortalENSG00000139746
TCGA cBioPortalRBM26
AceView (NCBI)RBM26
Genatlas (Paris)RBM26
WikiGenes64062
SOURCE (Princeton)RBM26
Genetics Home Reference (NIH)RBM26
Genomic and cartography
GoldenPath hg19 (UCSC)RBM26  -     chr13:79893003-79980356 -  13q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM26  -     13q31.1   [Description]    (hg38-Dec_2013)
EnsemblRBM26 - 13q31.1 [CytoView hg19]  RBM26 - 13q31.1 [CytoView hg38]
Mapping of homologs : NCBIRBM26 [Mapview hg19]  RBM26 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF116667 AF273052 AK000954 AK024610 AK027339
RefSeq transcript (Entrez)NM_001286631 NM_001286632 NM_018605 NM_022118
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)RBM26
Cluster EST : UnigeneHs.732265 [ NCBI ]
CGAP (NCI)Hs.732265
Alternative Splicing GalleryENSG00000139746
Gene ExpressionRBM26 [ NCBI-GEO ]   RBM26 [ EBI - ARRAY_EXPRESS ]   RBM26 [ SEEK ]   RBM26 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64062
GTEX Portal (Tissue expression)RBM26
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T8P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T8P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T8P6
Splice isoforms : SwissVarQ5T8P6
PhosPhoSitePlusQ5T8P6
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    PWI_dom    RRM_dom    Znf_CCCH   
Domain families : Pfam (Sanger)PWI (PF01480)   
Domain families : Pfam (NCBI)pfam01480   
Domain families : Smart (EMBL)RRM (SM00360)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)RBM26
DMDM Disease mutations64062
Blocks (Seattle)RBM26
SuperfamilyQ5T8P6
Human Protein AtlasENSG00000139746
Peptide AtlasQ5T8P6
HPRD12611
IPIIPI00827541   IPI00329545   IPI00795335   IPI00646837   IPI00032188   IPI00449556   IPI00166555   IPI01015833   
Protein Interaction databases
DIP (DOE-UCLA)Q5T8P6
IntAct (EBI)Q5T8P6
FunCoupENSG00000139746
BioGRIDRBM26
STRING (EMBL)RBM26
ZODIACRBM26
Ontologies - Pathways
QuickGOQ5T8P6
Ontology : AmiGOnucleotide binding  protein binding  mRNA processing  negative regulation of phosphatase activity  poly(A) RNA binding  metal ion binding  
Ontology : EGO-EBInucleotide binding  protein binding  mRNA processing  negative regulation of phosphatase activity  poly(A) RNA binding  metal ion binding  
NDEx NetworkRBM26
Atlas of Cancer Signalling NetworkRBM26
Wikipedia pathwaysRBM26
Orthology - Evolution
OrthoDB64062
GeneTree (enSembl)ENSG00000139746
Phylogenetic Trees/Animal Genes : TreeFamRBM26
HOVERGENQ5T8P6
HOGENOMQ5T8P6
Homologs : HomoloGeneRBM26
Homology/Alignments : Family Browser (UCSC)RBM26
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM26
dbVarRBM26
ClinVarRBM26
1000_GenomesRBM26 
Exome Variant ServerRBM26
ExAC (Exome Aggregation Consortium)RBM26 (select the gene name)
Genetic variants : HAPMAP64062
Genomic Variants (DGV)RBM26 [DGVbeta]
DECIPHER (Syndromes)13:79893003-79980356  ENSG00000139746
CONAN: Copy Number AnalysisRBM26 
Mutations
ICGC Data PortalRBM26 
TCGA Data PortalRBM26 
Broad Tumor PortalRBM26
OASIS PortalRBM26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM26
DgiDB (Drug Gene Interaction Database)RBM26
DoCM (Curated mutations)RBM26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM26 (select a term)
intoGenRBM26
Cancer3DRBM26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM26
Genetic Testing Registry RBM26
NextProtQ5T8P6 [Medical]
TSGene64062
GENETestsRBM26
Huge Navigator RBM26 [HugePedia]
snp3D : Map Gene to Disease64062
BioCentury BCIQRBM26
ClinGenRBM26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64062
Chemical/Pharm GKB GenePA134982324
Clinical trialRBM26
Miscellaneous
canSAR (ICR)RBM26 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM26
EVEXRBM26
GoPubMedRBM26
iHOPRBM26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:34 CET 2017

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