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RBM27 (RNA binding motif protein 27)

Identity

Alias_symbol (synonym)KIAA1311
ARRS1
Psc1
ZC3H20
Other aliasZC3H18
HGNC (Hugo) RBM27
LocusID (NCBI) 54439
Atlas_Id 72520
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 145583163 and ends at 145668784 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GOLGA4 (3p22.2) / RBM27 (5q32)RBM27 (5q32) / RBM27 (5q32)RBM27 (5q32) / SLC35E2B (1p36.33)
TCERG1 (5q32) / RBM27 (5q32)TLN1 (9p13.3) / RBM27 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM27   29243
Cards
Entrez_Gene (NCBI)RBM27  54439  RNA binding motif protein 27
AliasesARRS1; Psc1; ZC3H18
GeneCards (Weizmann)RBM27
Ensembl hg19 (Hinxton)ENSG00000091009 [Gene_View]  chr5:145583163-145668784 [Contig_View]  RBM27 [Vega]
Ensembl hg38 (Hinxton)ENSG00000091009 [Gene_View]  chr5:145583163-145668784 [Contig_View]  RBM27 [Vega]
ICGC DataPortalENSG00000091009
TCGA cBioPortalRBM27
AceView (NCBI)RBM27
Genatlas (Paris)RBM27
WikiGenes54439
SOURCE (Princeton)RBM27
Genetics Home Reference (NIH)RBM27
Genomic and cartography
GoldenPath hg19 (UCSC)RBM27  -     chr5:145583163-145668784 +  5q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM27  -     5q32   [Description]    (hg38-Dec_2013)
EnsemblRBM27 - 5q32 [CytoView hg19]  RBM27 - 5q32 [CytoView hg38]
Mapping of homologs : NCBIRBM27 [Mapview hg19]  RBM27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037732 AK026358 AK074316 AK128738 AL833706
RefSeq transcript (Entrez)NM_018989
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)RBM27
Cluster EST : UnigeneHs.61441 [ NCBI ]
CGAP (NCI)Hs.61441
Alternative Splicing GalleryENSG00000091009
Gene ExpressionRBM27 [ NCBI-GEO ]   RBM27 [ EBI - ARRAY_EXPRESS ]   RBM27 [ SEEK ]   RBM27 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54439
GTEX Portal (Tissue expression)RBM27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2N5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2N5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2N5
Splice isoforms : SwissVarQ9P2N5
PhosPhoSitePlusQ9P2N5
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    PWI_dom    RRM_dom    Znf_CCCH   
Domain families : Pfam (Sanger)PWI (PF01480)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam01480    pfam00642   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM27
DMDM Disease mutations54439
Blocks (Seattle)RBM27
SuperfamilyQ9P2N5
Human Protein AtlasENSG00000091009
Peptide AtlasQ9P2N5
IPIIPI00292975   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2N5
IntAct (EBI)Q9P2N5
FunCoupENSG00000091009
BioGRIDRBM27
STRING (EMBL)RBM27
ZODIACRBM27
Ontologies - Pathways
QuickGOQ9P2N5
Ontology : AmiGOnucleotide binding  nucleoplasm  cytoplasm  mRNA processing  nuclear speck  poly(A) RNA binding  metal ion binding  
Ontology : EGO-EBInucleotide binding  nucleoplasm  cytoplasm  mRNA processing  nuclear speck  poly(A) RNA binding  metal ion binding  
NDEx NetworkRBM27
Atlas of Cancer Signalling NetworkRBM27
Wikipedia pathwaysRBM27
Orthology - Evolution
OrthoDB54439
GeneTree (enSembl)ENSG00000091009
Phylogenetic Trees/Animal Genes : TreeFamRBM27
HOVERGENQ9P2N5
HOGENOMQ9P2N5
Homologs : HomoloGeneRBM27
Homology/Alignments : Family Browser (UCSC)RBM27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM27
dbVarRBM27
ClinVarRBM27
1000_GenomesRBM27 
Exome Variant ServerRBM27
ExAC (Exome Aggregation Consortium)RBM27 (select the gene name)
Genetic variants : HAPMAP54439
Genomic Variants (DGV)RBM27 [DGVbeta]
DECIPHER (Syndromes)5:145583163-145668784  ENSG00000091009
CONAN: Copy Number AnalysisRBM27 
Mutations
ICGC Data PortalRBM27 
TCGA Data PortalRBM27 
Broad Tumor PortalRBM27
OASIS PortalRBM27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM27
DgiDB (Drug Gene Interaction Database)RBM27
DoCM (Curated mutations)RBM27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM27 (select a term)
intoGenRBM27
Cancer3DRBM27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM27
Genetic Testing Registry RBM27
NextProtQ9P2N5 [Medical]
TSGene54439
GENETestsRBM27
Huge Navigator RBM27 [HugePedia]
snp3D : Map Gene to Disease54439
BioCentury BCIQRBM27
ClinGenRBM27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54439
Chemical/Pharm GKB GenePA134925458
Clinical trialRBM27
Miscellaneous
canSAR (ICR)RBM27 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM27
EVEXRBM27
GoPubMedRBM27
iHOPRBM27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:40 CET 2017

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