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RBM28 (RNA binding motif protein 28)

Identity

Alias_symbol (synonym)FLJ10377
Other aliasANES
HGNC (Hugo) RBM28
LocusID (NCBI) 55131
Atlas_Id 72521
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128310383 and ends at 128343908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MSL1 (17q21.1) / RBM28 (7q32.1)RBM28 (7q32.1) / ACOT7 (1p36.31)RBM28 (7q32.1) / AOAH (7p14.2)
RBM28 (7q32.1) / KMT2C (7q36.1)RBM28 (7q32.1) / NAALADL2 (3q26.31)RBM28 MLL3
RBM28 AOAH

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM28   21863
Cards
Entrez_Gene (NCBI)RBM28  55131  RNA binding motif protein 28
AliasesANES
GeneCards (Weizmann)RBM28
Ensembl hg19 (Hinxton)ENSG00000106344 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106344 [Gene_View]  chr7:128310383-128343908 [Contig_View]  RBM28 [Vega]
ICGC DataPortalENSG00000106344
TCGA cBioPortalRBM28
AceView (NCBI)RBM28
Genatlas (Paris)RBM28
WikiGenes55131
SOURCE (Princeton)RBM28
Genetics Home Reference (NIH)RBM28
Genomic and cartography
GoldenPath hg38 (UCSC)RBM28  -     chr7:128310383-128343908 -  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM28  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblRBM28 - 7q32.1 [CytoView hg19]  RBM28 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIRBM28 [Mapview hg19]  RBM28 [Mapview hg38]
OMIM612074   612079   
Gene and transcription
Genbank (Entrez)AK001239 AK001384 AK222716 AK300500 BC013889
RefSeq transcript (Entrez)NM_001166135 NM_018077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM28
Cluster EST : UnigeneHs.552129 [ NCBI ]
CGAP (NCI)Hs.552129
Alternative Splicing GalleryENSG00000106344
Gene ExpressionRBM28 [ NCBI-GEO ]   RBM28 [ EBI - ARRAY_EXPRESS ]   RBM28 [ SEEK ]   RBM28 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55131
GTEX Portal (Tissue expression)RBM28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NW13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NW13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NW13
Splice isoforms : SwissVarQ9NW13
PhosPhoSitePlusQ9NW13
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM28
DMDM Disease mutations55131
Blocks (Seattle)RBM28
SuperfamilyQ9NW13
Human Protein AtlasENSG00000106344
Peptide AtlasQ9NW13
HPRD07668
IPIIPI00304187   IPI00946105   IPI00909372   IPI00944978   IPI00945927   
Protein Interaction databases
DIP (DOE-UCLA)Q9NW13
IntAct (EBI)Q9NW13
FunCoupENSG00000106344
BioGRIDRBM28
STRING (EMBL)RBM28
ZODIACRBM28
Ontologies - Pathways
QuickGOQ9NW13
Ontology : AmiGORNA binding  spliceosomal complex  nucleolus  mRNA processing  RNA splicing  
Ontology : EGO-EBIRNA binding  spliceosomal complex  nucleolus  mRNA processing  RNA splicing  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkRBM28
Atlas of Cancer Signalling NetworkRBM28
Wikipedia pathwaysRBM28
Orthology - Evolution
OrthoDB55131
GeneTree (enSembl)ENSG00000106344
Phylogenetic Trees/Animal Genes : TreeFamRBM28
HOVERGENQ9NW13
HOGENOMQ9NW13
Homologs : HomoloGeneRBM28
Homology/Alignments : Family Browser (UCSC)RBM28
Gene fusions - Rearrangements
Fusion: TCGARBM28 MLL3
Fusion: TCGARBM28 AOAH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM28
dbVarRBM28
ClinVarRBM28
1000_GenomesRBM28 
Exome Variant ServerRBM28
ExAC (Exome Aggregation Consortium)RBM28 (select the gene name)
Genetic variants : HAPMAP55131
Genomic Variants (DGV)RBM28 [DGVbeta]
DECIPHERRBM28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM28 
Mutations
ICGC Data PortalRBM28 
TCGA Data PortalRBM28 
Broad Tumor PortalRBM28
OASIS PortalRBM28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM28
DgiDB (Drug Gene Interaction Database)RBM28
DoCM (Curated mutations)RBM28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM28 (select a term)
intoGenRBM28
Cancer3DRBM28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612074    612079   
Orphanet17162   
MedgenRBM28
Genetic Testing Registry RBM28
NextProtQ9NW13 [Medical]
TSGene55131
GENETestsRBM28
Target ValidationRBM28
Huge Navigator RBM28 [HugePedia]
snp3D : Map Gene to Disease55131
BioCentury BCIQRBM28
ClinGenRBM28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55131
Chemical/Pharm GKB GenePA134867266
Clinical trialRBM28
Miscellaneous
canSAR (ICR)RBM28 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM28
EVEXRBM28
GoPubMedRBM28
iHOPRBM28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:18 CEST 2017

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