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RBM3 (RNA binding motif (RNP1, RRM) protein 3)

Identity

Alias_namesRNA binding motif protein 3
Alias_symbol (synonym)IS1-RNPL
Other aliasRNPL
HGNC (Hugo) RBM3
LocusID (NCBI) 5935
Atlas_Id 43710
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48574353 and ends at 48581165 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NEGR1 (1p31.1) / RBM3 (Xp11.23)RBM3 (Xp11.23) / F3 (1p21.3)RBM3 (Xp11.23) / IGF1 (12q23.2)
RBM3 (Xp11.23) / ILK (11p15.4)RBM3 (Xp11.23) / NME7 (1q24.2)RBM3 (Xp11.23) / RBM3 (Xp11.23)
RBM3 (Xp11.23) / SIKE1 (1p13.2)SECISBP2 (9q22.2) / RBM3 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM3   9900
Cards
Entrez_Gene (NCBI)RBM3  5935  RNA binding motif (RNP1, RRM) protein 3
AliasesIS1-RNPL; RNPL
GeneCards (Weizmann)RBM3
Ensembl hg19 (Hinxton)ENSG00000102317 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102317 [Gene_View]  chrX:48574353-48581165 [Contig_View]  RBM3 [Vega]
ICGC DataPortalENSG00000102317
TCGA cBioPortalRBM3
AceView (NCBI)RBM3
Genatlas (Paris)RBM3
WikiGenes5935
SOURCE (Princeton)RBM3
Genetics Home Reference (NIH)RBM3
Genomic and cartography
GoldenPath hg38 (UCSC)RBM3  -     chrX:48574353-48581165 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM3  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblRBM3 - Xp11.23 [CytoView hg19]  RBM3 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIRBM3 [Mapview hg19]  RBM3 [Mapview hg38]
OMIM300027   
Gene and transcription
Genbank (Entrez)AA460548 AK000859 AK026664 AK289614 AK309137
RefSeq transcript (Entrez)NM_001017430 NM_001017431 NM_006743
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM3
Cluster EST : UnigeneHs.301404 [ NCBI ]
CGAP (NCI)Hs.301404
Alternative Splicing GalleryENSG00000102317
Gene ExpressionRBM3 [ NCBI-GEO ]   RBM3 [ EBI - ARRAY_EXPRESS ]   RBM3 [ SEEK ]   RBM3 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5935
GTEX Portal (Tissue expression)RBM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98179   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98179  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98179
Splice isoforms : SwissVarP98179
PhosPhoSitePlusP98179
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM3/CIRBP_RRM    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM3
DMDM Disease mutations5935
Blocks (Seattle)RBM3
SuperfamilyP98179
Human Protein AtlasENSG00000102317
Peptide AtlasP98179
HPRD02067
IPIIPI00443031   
Protein Interaction databases
DIP (DOE-UCLA)P98179
IntAct (EBI)P98179
FunCoupENSG00000102317
BioGRIDRBM3
STRING (EMBL)RBM3
ZODIACRBM3
Ontologies - Pathways
QuickGOP98179
Ontology : AmiGORNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  RNA processing  regulation of translation  large ribosomal subunit  dendrite  positive regulation of translation  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  RNA processing  regulation of translation  large ribosomal subunit  dendrite  positive regulation of translation  
NDEx NetworkRBM3
Atlas of Cancer Signalling NetworkRBM3
Wikipedia pathwaysRBM3
Orthology - Evolution
OrthoDB5935
GeneTree (enSembl)ENSG00000102317
Phylogenetic Trees/Animal Genes : TreeFamRBM3
HOVERGENP98179
HOGENOMP98179
Homologs : HomoloGeneRBM3
Homology/Alignments : Family Browser (UCSC)RBM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM3
dbVarRBM3
ClinVarRBM3
1000_GenomesRBM3 
Exome Variant ServerRBM3
ExAC (Exome Aggregation Consortium)RBM3 (select the gene name)
Genetic variants : HAPMAP5935
Genomic Variants (DGV)RBM3 [DGVbeta]
DECIPHERRBM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM3 
Mutations
ICGC Data PortalRBM3 
TCGA Data PortalRBM3 
Broad Tumor PortalRBM3
OASIS PortalRBM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM3
DgiDB (Drug Gene Interaction Database)RBM3
DoCM (Curated mutations)RBM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM3 (select a term)
intoGenRBM3
Cancer3DRBM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300027   
Orphanet
MedgenRBM3
Genetic Testing Registry RBM3
NextProtP98179 [Medical]
TSGene5935
GENETestsRBM3
Target ValidationRBM3
Huge Navigator RBM3 [HugePedia]
snp3D : Map Gene to Disease5935
BioCentury BCIQRBM3
ClinGenRBM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5935
Chemical/Pharm GKB GenePA34265
Clinical trialRBM3
Miscellaneous
canSAR (ICR)RBM3 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM3
EVEXRBM3
GoPubMedRBM3
iHOPRBM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:12:42 CEST 2017

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