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RBM33 (RNA binding motif protein 33)

Identity

Alias_namesPRR8
proline rich 8
Alias_symbol (synonym)DKFZp686F102
MGC20460
DKFZp434D1319
Other alias
HGNC (Hugo) RBM33
LocusID (NCBI) 155435
Atlas_Id 72522
Location 7q36.3  [Link to chromosome band 7q36]
Location_base_pair Starts at 155644509 and ends at 155781485 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MYO5C (15q21.2) / RBM33 (7q36.3)RBM33 (7q36.3) / FLNB (3p14.3)RBM33 (7q36.3) / RBM33 (7q36.3)
SARS2 (19q13.2) / RBM33 (7q36.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM33   27223
Cards
Entrez_Gene (NCBI)RBM33  155435  RNA binding motif protein 33
AliasesPRR8
GeneCards (Weizmann)RBM33
Ensembl hg19 (Hinxton)ENSG00000184863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184863 [Gene_View]  chr7:155644509-155781485 [Contig_View]  RBM33 [Vega]
ICGC DataPortalENSG00000184863
TCGA cBioPortalRBM33
AceView (NCBI)RBM33
Genatlas (Paris)RBM33
WikiGenes155435
SOURCE (Princeton)RBM33
Genetics Home Reference (NIH)RBM33
Genomic and cartography
GoldenPath hg38 (UCSC)RBM33  -     chr7:155644509-155781485 +  7q36.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM33  -     7q36.3   [Description]    (hg19-Feb_2009)
EnsemblRBM33 - 7q36.3 [CytoView hg19]  RBM33 - 7q36.3 [CytoView hg38]
Mapping of homologs : NCBIRBM33 [Mapview hg19]  RBM33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055460 AK055645 AK056415 AK301179 AK307515
RefSeq transcript (Entrez)NM_001008408 NM_053043
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM33
Cluster EST : UnigeneHs.591815 [ NCBI ]
CGAP (NCI)Hs.591815
Alternative Splicing GalleryENSG00000184863
Gene ExpressionRBM33 [ NCBI-GEO ]   RBM33 [ EBI - ARRAY_EXPRESS ]   RBM33 [ SEEK ]   RBM33 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)155435
GTEX Portal (Tissue expression)RBM33
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EV2
Splice isoforms : SwissVarQ96EV2
PhosPhoSitePlusQ96EV2
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM33
DMDM Disease mutations155435
Blocks (Seattle)RBM33
SuperfamilyQ96EV2
Human Protein AtlasENSG00000184863
Peptide AtlasQ96EV2
HPRD17310
IPIIPI00852584   IPI00061758   IPI00853412   IPI00852727   IPI00852824   IPI00853474   IPI00915030   IPI00852658   IPI00925688   
Protein Interaction databases
DIP (DOE-UCLA)Q96EV2
IntAct (EBI)Q96EV2
FunCoupENSG00000184863
BioGRIDRBM33
STRING (EMBL)RBM33
ZODIACRBM33
Ontologies - Pathways
QuickGOQ96EV2
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkRBM33
Atlas of Cancer Signalling NetworkRBM33
Wikipedia pathwaysRBM33
Orthology - Evolution
OrthoDB155435
GeneTree (enSembl)ENSG00000184863
Phylogenetic Trees/Animal Genes : TreeFamRBM33
HOVERGENQ96EV2
HOGENOMQ96EV2
Homologs : HomoloGeneRBM33
Homology/Alignments : Family Browser (UCSC)RBM33
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM33
dbVarRBM33
ClinVarRBM33
1000_GenomesRBM33 
Exome Variant ServerRBM33
ExAC (Exome Aggregation Consortium)RBM33 (select the gene name)
Genetic variants : HAPMAP155435
Genomic Variants (DGV)RBM33 [DGVbeta]
DECIPHERRBM33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM33 
Mutations
ICGC Data PortalRBM33 
TCGA Data PortalRBM33 
Broad Tumor PortalRBM33
OASIS PortalRBM33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM33
DgiDB (Drug Gene Interaction Database)RBM33
DoCM (Curated mutations)RBM33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM33 (select a term)
intoGenRBM33
Cancer3DRBM33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM33
Genetic Testing Registry RBM33
NextProtQ96EV2 [Medical]
TSGene155435
GENETestsRBM33
Target ValidationRBM33
Huge Navigator RBM33 [HugePedia]
snp3D : Map Gene to Disease155435
BioCentury BCIQRBM33
ClinGenRBM33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155435
Chemical/Pharm GKB GenePA142671093
Clinical trialRBM33
Miscellaneous
canSAR (ICR)RBM33 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM33
EVEXRBM33
GoPubMedRBM33
iHOPRBM33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:18 CEST 2017

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