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RBM34 (RNA binding motif protein 34)

Identity

Alias_symbol (synonym)KIAA0117
Other alias-
HGNC (Hugo) RBM34
LocusID (NCBI) 23029
Atlas_Id 72523
Location 1q42.3  [Link to chromosome band 1q42]
Location_base_pair Starts at 235131183 and ends at 235161616 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RBM34 (1q42.3) / CARD10 (22q13.1)RBM34 (1q42.3) / GGPS1 (1q42.3)TARBP1 (1q42.2) / RBM34 (1q42.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM34   28965
Cards
Entrez_Gene (NCBI)RBM34  23029  RNA binding motif protein 34
Aliases
GeneCards (Weizmann)RBM34
Ensembl hg19 (Hinxton)ENSG00000188739 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188739 [Gene_View]  chr1:235131183-235161616 [Contig_View]  RBM34 [Vega]
ICGC DataPortalENSG00000188739
TCGA cBioPortalRBM34
AceView (NCBI)RBM34
Genatlas (Paris)RBM34
WikiGenes23029
SOURCE (Princeton)RBM34
Genetics Home Reference (NIH)RBM34
Genomic and cartography
GoldenPath hg38 (UCSC)RBM34  -     chr1:235131183-235161616 -  1q42.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM34  -     1q42.3   [Description]    (hg19-Feb_2009)
EnsemblRBM34 - 1q42.3 [CytoView hg19]  RBM34 - 1q42.3 [CytoView hg38]
Mapping of homologs : NCBIRBM34 [Mapview hg19]  RBM34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292362 BC029451 BM995796 BQ000441 CB052493
RefSeq transcript (Entrez)NM_001161533 NM_001346738 NM_015014
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM34
Cluster EST : UnigeneHs.535224 [ NCBI ]
CGAP (NCI)Hs.535224
Alternative Splicing GalleryENSG00000188739
Gene ExpressionRBM34 [ NCBI-GEO ]   RBM34 [ EBI - ARRAY_EXPRESS ]   RBM34 [ SEEK ]   RBM34 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23029
GTEX Portal (Tissue expression)RBM34
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42696   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42696  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42696
Splice isoforms : SwissVarP42696
PhosPhoSitePlusP42696
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM34_RRM1    RBM34_RRM2    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM34
DMDM Disease mutations23029
Blocks (Seattle)RBM34
SuperfamilyP42696
Human Protein AtlasENSG00000188739
Peptide AtlasP42696
HPRD11065
IPIIPI00181617   IPI00930357   IPI00658072   IPI00514231   IPI00930315   IPI00945774   
Protein Interaction databases
DIP (DOE-UCLA)P42696
IntAct (EBI)P42696
FunCoupENSG00000188739
BioGRIDRBM34
STRING (EMBL)RBM34
ZODIACRBM34
Ontologies - Pathways
QuickGOP42696
Ontology : AmiGORNA binding  nucleus  nucleolus  
Ontology : EGO-EBIRNA binding  nucleus  nucleolus  
NDEx NetworkRBM34
Atlas of Cancer Signalling NetworkRBM34
Wikipedia pathwaysRBM34
Orthology - Evolution
OrthoDB23029
GeneTree (enSembl)ENSG00000188739
Phylogenetic Trees/Animal Genes : TreeFamRBM34
HOVERGENP42696
HOGENOMP42696
Homologs : HomoloGeneRBM34
Homology/Alignments : Family Browser (UCSC)RBM34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM34
dbVarRBM34
ClinVarRBM34
1000_GenomesRBM34 
Exome Variant ServerRBM34
ExAC (Exome Aggregation Consortium)RBM34 (select the gene name)
Genetic variants : HAPMAP23029
Genomic Variants (DGV)RBM34 [DGVbeta]
DECIPHERRBM34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM34 
Mutations
ICGC Data PortalRBM34 
TCGA Data PortalRBM34 
Broad Tumor PortalRBM34
OASIS PortalRBM34 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRBM34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM34
DgiDB (Drug Gene Interaction Database)RBM34
DoCM (Curated mutations)RBM34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM34 (select a term)
intoGenRBM34
Cancer3DRBM34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM34
Genetic Testing Registry RBM34
NextProtP42696 [Medical]
TSGene23029
GENETestsRBM34
Target ValidationRBM34
Huge Navigator RBM34 [HugePedia]
snp3D : Map Gene to Disease23029
BioCentury BCIQRBM34
ClinGenRBM34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23029
Chemical/Pharm GKB GenePA142671094
Clinical trialRBM34
Miscellaneous
canSAR (ICR)RBM34 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM34
EVEXRBM34
GoPubMedRBM34
iHOPRBM34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:56 CEST 2017

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