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RBM34 (RNA binding motif protein 34)

Identity

Alias (NCBI)-
HGNC (Hugo) RBM34
HGNC Alias symbKIAA0117
LocusID (NCBI) 23029
Atlas_Id 72523
Location 1q42.3  [Link to chromosome band 1q42]
Location_base_pair Starts at 235131183 and ends at 235161250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBM34 (1q42.3) / CARD10 (22q13.1)RBM34 (1q42.3) / GGPS1 (1q42.3)TARBP1 (1q42.2) / RBM34 (1q42.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBM34   28965
Cards
Entrez_Gene (NCBI)RBM34    RNA binding motif protein 34
Aliases
GeneCards (Weizmann)RBM34
Ensembl hg19 (Hinxton)ENSG00000188739 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188739 [Gene_View]  ENSG00000188739 [Sequence]  chr1:235131183-235161250 [Contig_View]  RBM34 [Vega]
ICGC DataPortalENSG00000188739
TCGA cBioPortalRBM34
AceView (NCBI)RBM34
Genatlas (Paris)RBM34
SOURCE (Princeton)RBM34
Genetics Home Reference (NIH)RBM34
Genomic and cartography
GoldenPath hg38 (UCSC)RBM34  -     chr1:235131183-235161250 -  1q42.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM34  -     1q42.3   [Description]    (hg19-Feb_2009)
GoldenPathRBM34 - 1q42.3 [CytoView hg19]  RBM34 - 1q42.3 [CytoView hg38]
ImmunoBaseENSG00000188739
Genome Data Viewer NCBIRBM34 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK292362 BC029451 BM995796 BQ000441 CB052493
RefSeq transcript (Entrez)NM_001161533 NM_001346738 NM_015014
Consensus coding sequences : CCDS (NCBI)RBM34
Gene ExpressionRBM34 [ NCBI-GEO ]   RBM34 [ EBI - ARRAY_EXPRESS ]   RBM34 [ SEEK ]   RBM34 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM34 [ Firebrowse - Broad ]
GenevisibleExpression of RBM34 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23029
GTEX Portal (Tissue expression)RBM34
Human Protein AtlasENSG00000188739-RBM34 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42696   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42696  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42696
PhosPhoSitePlusP42696
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RBM34_RRM1    RBM34_RRM2    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM34
SuperfamilyP42696
AlphaFold pdb e-kbP42696   
Human Protein Atlas [tissue]ENSG00000188739-RBM34 [tissue]
HPRD11065
Protein Interaction databases
DIP (DOE-UCLA)P42696
IntAct (EBI)P42696
BioGRIDRBM34
STRING (EMBL)RBM34
ZODIACRBM34
Ontologies - Pathways
QuickGOP42696
Ontology : AmiGORNA binding  nucleoplasm  chromosome  nucleolus  
Ontology : EGO-EBIRNA binding  nucleoplasm  chromosome  nucleolus  
NDEx NetworkRBM34
Atlas of Cancer Signalling NetworkRBM34
Wikipedia pathwaysRBM34
Orthology - Evolution
OrthoDB23029
GeneTree (enSembl)ENSG00000188739
Phylogenetic Trees/Animal Genes : TreeFamRBM34
Homologs : HomoloGeneRBM34
Homology/Alignments : Family Browser (UCSC)RBM34
Gene fusions - Rearrangements
Fusion : QuiverRBM34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM34
dbVarRBM34
ClinVarRBM34
MonarchRBM34
1000_GenomesRBM34 
Exome Variant ServerRBM34
GNOMAD BrowserENSG00000188739
Varsome BrowserRBM34
ACMGRBM34 variants
VarityP42696
Genomic Variants (DGV)RBM34 [DGVbeta]
DECIPHERRBM34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM34 
Mutations
ICGC Data PortalRBM34 
TCGA Data PortalRBM34 
Broad Tumor PortalRBM34
OASIS PortalRBM34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM34  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBM34
Mutations and Diseases : HGMDRBM34
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBM34
DgiDB (Drug Gene Interaction Database)RBM34
DoCM (Curated mutations)RBM34
CIViC (Clinical Interpretations of Variants in Cancer)RBM34
Cancer3DRBM34
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBM34
MedgenRBM34
Genetic Testing Registry RBM34
NextProtP42696 [Medical]
GENETestsRBM34
Target ValidationRBM34
Huge Navigator RBM34 [HugePedia]
ClinGenRBM34
Clinical trials, drugs, therapy
MyCancerGenomeRBM34
Protein Interactions : CTDRBM34
Pharm GKB GenePA142671094
PharosP42696
Clinical trialRBM34
Miscellaneous
canSAR (ICR)RBM34
HarmonizomeRBM34
DataMed IndexRBM34
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBM34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:18:03 CEST 2021

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